Detailed information NTG0998118

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: ABDZ24_RS04645
• Genome accession: NZ_CP155623
• Coordinates: 853938..855287 (+)
• Length: 449 a.a.
• NCBI ID: WP_000879442.1
• Uniprot ID: -
• Organism: Bacillus paramobilis strain N24509
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 848938..860287

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDZ24_RS04625 (ABDZ24_04630)	-	850043..850678 (-)	636	WP_000926679.1	YigZ family protein	-
ABDZ24_RS04630 (ABDZ24_04635)	-	850918..851760 (+)	843	WP_346817728.1	DegV family protein	-
ABDZ24_RS04635 (ABDZ24_04640)	-	851932..852246 (+)	315	WP_000400858.1	helix-turn-helix domain-containing protein	-
ABDZ24_RS04640 (ABDZ24_04645)	-	852500..853810 (+)	1311	WP_000734338.1	C40 family peptidase	-
ABDZ24_RS04645 (ABDZ24_04650)	comFA	853938..855287 (+)	1350	WP_000879442.1	ATP-dependent helicase ComFA	Machinery gene
ABDZ24_RS04650 (ABDZ24_04655)	-	855287..855991 (+)	705	WP_346817729.1	ComF family protein	-
ABDZ24_RS04655 (ABDZ24_04660)	cspC	856118..856315 (+)	198	WP_001990088.1	cold shock protein CspC	-
ABDZ24_RS04660 (ABDZ24_04665)	raiA	856636..857178 (+)	543	WP_000671193.1	ribosome-associated translation inhibitor RaiA	-
ABDZ24_RS04665 (ABDZ24_04670)	secA	857453..859960 (+)	2508	WP_000579393.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51051.76 Da
• Isoelectric Point: 9.7474

>NTDB_id=998118 ABDZ24_RS04645 WP_000879442.1 853938..855287(+) (comFA) [Bacillus paramobilis strain N24509]
MLAGKQLLLEELSSDLRRELSDLKRKGEVVCVQGITKKASKYICQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERTGEKSLNSLQWNGTLSTGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIAKAIQKGERVCIAT
PRTDVVLELAPRLQEVFPHINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRRGKQKGVIISGRYHRYPLPVPLFCWCGNWKKSLHHKKIPRVLLQWLEMYVNKKHPIFL
FVPHVRYIEEMSLLLKSLDNRVEGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHCGKTEAMVRAKRHIQSMNKKAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=998118 ABDZ24_RS04645 WP_000879442.1 853938..855287(+) (comFA) [Bacillus paramobilis strain N24509]
ATGCTTGCTGGAAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAGGAAGGG
AGAGGTCGTATGTGTACAAGGTATAACAAAAAAGGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAACGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAGTAAAGTGTGCACGTATTGTCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTCGTTCGTGGGATTGCTGAAAGAACAGGTGAAAAAAGTTTAAATTCGTTACAGTGGAATGGGACTTT
GTCTACTGGTCAGGAGTTGGCTGCGCAAGGTGTTATAGAGGCTATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTTACGGTATTGCAAAGGCAATTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACAGATGTTGTACTGGAATTAGCACCGAGATTACAAGAAGTGTTTCCGCATATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGACCGGGAAAAAGATGCAGCGTTAGTCGTTGCAACGACGCATCAATTGTTACGTTACTATAGAGCATTTC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCGGATCAAATGTTACAGTATGCAGTACAACAAGCGATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAATTTCAGAAGGGGTAAACAAAA
AGGTGTCATTATCTCTGGGCGATATCATCGTTATCCGTTGCCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATCCCTCGAGTTTTACTACAATGGTTAGAAATGTACGTAAATAAAAAACATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATGAGCCTGTTATTGAAATCGTTGGATAATAGAGTGGAAGGTGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTAGCAGCTTTCAGGAAGGGAGAAATTCCGTTATTAGTTACGACGACAATTTTAG
AGAGAGGAGTAACTGTGAAGAATTTACAAGTTGCGGTGTTAGGGGCAGAAGAAGAAATCTTTTCGGAAAGTGCACTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCTTATGGCGAGGTTGTTTATTTTCATTGCGGTAAGACAGAGGC
GATGGTACGCGCGAAAAGGCATATTCAAAGTATGAACAAAAAGGCGAAAGAACAAGGATTAATCGATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (311-408)

• Type III restriction enzyme, res subunit (ResIII) (107-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	51.914	93.096	0.483