Detailed information NTG0998112

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ABDZ24_RS03095
• Genome accession: NZ_CP155623
• Coordinates: 526468..527595 (-)
• Length: 375 a.a.
• NCBI ID: WP_000470743.1
• Uniprot ID: A0A164MC53
• Organism: Bacillus paramobilis strain N24509
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 521468..532595

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDZ24_RS03085 (ABDZ24_03090)	gyrA	521947..524418 (-)	2472	WP_001282859.1	DNA gyrase subunit A	-
ABDZ24_RS03090 (ABDZ24_03095)	gyrB	524507..526429 (-)	1923	WP_000435976.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
ABDZ24_RS03095 (ABDZ24_03100)	recF	526468..527595 (-)	1128	WP_000470743.1	DNA replication/repair protein RecF	Machinery gene
ABDZ24_RS03100 (ABDZ24_03105)	yaaA	527608..527820 (-)	213	WP_000821366.1	S4 domain-containing protein YaaA	-
ABDZ24_RS03105 (ABDZ24_03110)	dnaN	527948..529087 (-)	1140	WP_001212888.1	DNA polymerase III subunit beta	-
ABDZ24_RS03110 (ABDZ24_03115)	dnaA	529266..530606 (-)	1341	WP_000428024.1	chromosomal replication initiator protein DnaA	-
ABDZ24_RS03115 (ABDZ24_03120)	rpmH	531172..531306 (+)	135	WP_000831901.1	50S ribosomal protein L34	-
ABDZ24_RS03120 (ABDZ24_03125)	rnpA	531383..531730 (+)	348	WP_000750813.1	ribonuclease P protein component	-
ABDZ24_RS03125 (ABDZ24_03130)	spoIIIJ	531783..532550 (+)	768	WP_000726760.1	YidC family membrane integrase SpoIIIJ	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 43363.72 Da
• Isoelectric Point: 6.7809

>NTDB_id=998112 ABDZ24_RS03095 WP_000470743.1 526468..527595(-) (recF) [Bacillus paramobilis strain N24509]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide

• Length: 1128 bp

>NTDB_id=998112 ABDZ24_RS03095 WP_000470743.1 526468..527595(-) (recF) [Bacillus paramobilis strain N24509]
TTGTTTATTTCAGAAATACAGTTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAAGTTAATGT
GATTATCGGTGAAAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTACGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGACTTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCATGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCCCCAGTCTATTTGTATGAATTGAGTCAATATCAAAAAGTGCTCACGCAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATATTGCAAAAACGGTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAATTTTCAATCTGTGAAACAACGTGAGATTTTCCGTGGTACAACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

3D structure

• AlphaFold DB: A0A164MC53

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	66.576	98.133	0.653