Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABDZ23_RS12795 Genome accession   NZ_CP155621
Coordinates   2835234..2835638 (-) Length   134 a.a.
NCBI ID   WP_003229093.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain BM06     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2830234..2840638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ23_RS12780 (ABDZ23_12780) - 2832049..2834103 (-) 2055 WP_247267296.1 methyl-accepting chemotaxis protein -
  ABDZ23_RS12785 (ABDZ23_12785) - 2834258..2834797 (-) 540 WP_007964098.1 chemotaxis protein CheW -
  ABDZ23_RS12790 (ABDZ23_12790) pilH 2834808..2835173 (-) 366 WP_025109154.1 twitching motility response regulator PilH -
  ABDZ23_RS12795 (ABDZ23_12795) pilG 2835234..2835638 (-) 405 WP_003229093.1 twitching motility response regulator PilG Regulator
  ABDZ23_RS12800 (ABDZ23_12800) gshB 2835864..2836835 (+) 972 WP_095137531.1 glutathione synthase -
  ABDZ23_RS12805 (ABDZ23_12805) - 2836943..2837842 (+) 900 WP_007964106.1 energy transducer TonB -
  ABDZ23_RS12810 (ABDZ23_12810) - 2838016..2838588 (+) 573 WP_025109150.1 YqgE/AlgH family protein -
  ABDZ23_RS12815 (ABDZ23_12815) ruvX 2838588..2839025 (+) 438 WP_003229101.1 Holliday junction resolvase RuvX -
  ABDZ23_RS12820 (ABDZ23_12820) pyrR 2839107..2839613 (+) 507 WP_027610583.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14617.02 Da        Isoelectric Point: 6.7107

>NTDB_id=998092 ABDZ23_RS12795 WP_003229093.1 2835234..2835638(-) (pilG) [Pseudomonas koreensis strain BM06]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIADHHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
ATPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLDAIQAHVPGFAAVLPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=998092 ABDZ23_RS12795 WP_003229093.1 2835234..2835638(-) (pilG) [Pseudomonas koreensis strain BM06]
ATGGAACAGCAGTCCAGCGCCTTGAAGGTCATGGTGATCGATGACTCGAAAACGATTCGTCGCACCGCCGAAACGCTGTT
GAAAAATGTGGGCTGCGAAGTCATCACGGCGATCGATGGCTTCGACGCTTTGGCGAAGATCGCCGACCACCACCCCGGGA
TCATTTTTGTCGACATCATGATGCCGCGTCTGGATGGTTATCAGACCTGCGCTTTAATCAAGAACAACAGTGCGTTCAAG
GCCACGCCGGTGATCATGCTGTCGTCGCGTGACGGGCTGTTCGACAAGGCCAAGGGGCGGATTGTCGGTTCTGATCAATT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTCGACGCGATTCAGGCCCATGTTCCGGGCTTCGCCGCCGTTTTGCCGC
AGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.4

93.284

0.694

Multiple sequence alignment