Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   AAH949_RS09225 Genome accession   NZ_CP155620
Coordinates   1823020..1824453 (+) Length   477 a.a.
NCBI ID   WP_348518584.1    Uniprot ID   -
Organism   Campylobacter sp. CCS1377     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1818020..1829453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH949_RS09210 (AAH949_09210) - 1818414..1819058 (+) 645 WP_134238739.1 HAD family hydrolase -
  AAH949_RS09215 (AAH949_09215) nifJ 1819139..1822699 (+) 3561 WP_348518582.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  AAH949_RS09220 (AAH949_09220) - 1822755..1823033 (+) 279 WP_348518583.1 hypothetical protein -
  AAH949_RS09225 (AAH949_09225) ctsD 1823020..1824453 (+) 1434 WP_348518584.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AAH949_RS09230 (AAH949_09230) - 1824443..1825126 (+) 684 WP_348518585.1 ATP-binding protein -
  AAH949_RS09235 (AAH949_09235) - 1825128..1825745 (+) 618 WP_348518586.1 CDC27 family protein -
  AAH949_RS09240 (AAH949_09240) - 1825742..1827385 (+) 1644 WP_348518587.1 GspE/PulE family protein -
  AAH949_RS09245 (AAH949_09245) - 1827382..1828575 (+) 1194 WP_348518588.1 type II secretion system F family protein -
  AAH949_RS09250 (AAH949_09250) - 1828553..1828744 (-) 192 WP_348518589.1 transcriptional regulator -
  AAH949_RS09255 (AAH949_09255) - 1828821..1828946 (+) 126 WP_348518590.1 hypothetical protein -
  AAH949_RS09260 (AAH949_09260) - 1829004..1829348 (+) 345 WP_348518591.1 hypothetical protein -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53733.45 Da        Isoelectric Point: 6.1853

>NTDB_id=998074 AAH949_RS09225 WP_348518584.1 1823020..1824453(+) (ctsD) [Campylobacter sp. CCS1377]
MLIFRVVLLIIFFLSASKANECQKKLFDMRIMEAVSIEESLEHFSNLCSFSIVVKDDLAKDKLLKMQKNINVSQMSLDEI
FDLLIKENNLNYEFDGKILKISGLITQSFKINYITSVREGQSITKASVDAKPKQAEYSIRDGDLEDNMIKTSEKFDFWIT
IEKELLALLNNGREVYEVKNPIINSNAGIITITGTNSQIARANVYLKELEQRLKKQVIIDVSIIAVNLDNKHTSGINWQN
FNLNFATTTSDGKNSSIQFDYKDKGVFVKNLGFRVDMDFSSVLNFLSQSGKTQVLSNPKLMALNNQQAIISIGDTINYQV
KESSKGTENGTTVSETYNNYSIFVGILLNILPEISDDGKIMLRINPSLSNFKYAQDNRRQNTPRTIAPDTIQKKLSTVVQ
VENNQSLILGGLISRNNQFDESSVNFLSKIPLLGALFQGDQSVDNATEIVFIITPVIVDNKNTHPSLKDLGFKHYEL

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=998074 AAH949_RS09225 WP_348518584.1 1823020..1824453(+) (ctsD) [Campylobacter sp. CCS1377]
ATGTTAATTTTTAGAGTAGTTTTATTAATAATATTTTTTCTTAGTGCCTCAAAAGCCAATGAATGCCAAAAAAAGCTTTT
TGATATGCGTATAATGGAAGCAGTAAGCATAGAAGAGAGTTTGGAACATTTTTCGAATTTATGCTCCTTTAGCATAGTTG
TAAAAGATGATTTGGCTAAAGATAAATTGCTAAAAATGCAAAAAAATATCAATGTTAGTCAAATGAGCTTGGATGAAATT
TTTGACCTTTTAATTAAAGAAAATAACTTAAACTACGAATTTGATGGCAAAATTCTAAAAATTTCAGGACTAATTACTCA
AAGCTTTAAAATCAACTATATTACTTCAGTCAGAGAAGGACAAAGCATTACAAAAGCATCCGTAGATGCAAAACCAAAAC
AAGCAGAATACAGTATTAGAGATGGGGATTTAGAAGATAATATGATTAAAACCTCTGAAAAATTTGACTTTTGGATCACC
ATAGAAAAAGAACTACTTGCCCTACTTAACAATGGTCGCGAAGTTTATGAAGTAAAAAATCCCATCATAAACTCAAACGC
AGGTATTATAACCATCACAGGTACAAATTCTCAAATTGCAAGAGCCAATGTCTATCTTAAAGAACTAGAGCAAAGACTTA
AAAAGCAAGTTATTATCGATGTAAGCATTATTGCTGTAAATTTGGATAATAAACACACAAGTGGAATTAACTGGCAAAAT
TTCAATCTCAATTTTGCTACAACAACTAGCGATGGAAAAAATTCATCTATACAATTTGATTATAAAGACAAAGGGGTATT
TGTTAAAAATTTAGGTTTTAGAGTAGATATGGACTTTAGTTCGGTTTTAAATTTCTTGTCCCAAAGCGGAAAAACACAAG
TTTTATCAAATCCAAAATTAATGGCACTGAATAACCAACAGGCTATTATTTCGATAGGCGATACAATCAATTATCAAGTT
AAAGAAAGTTCAAAAGGCACAGAAAATGGCACAACAGTGAGTGAAACTTATAATAATTATTCTATTTTTGTAGGCATTTT
ACTCAATATCTTACCTGAAATTTCAGATGATGGAAAAATCATGCTGCGTATCAACCCAAGTCTTAGTAATTTTAAATACG
CCCAAGATAATCGTCGTCAAAATACTCCGCGCACTATAGCGCCCGATACCATACAAAAAAAGTTATCTACCGTTGTGCAA
GTTGAAAACAACCAAAGTCTAATTTTGGGTGGACTTATTAGCAGAAACAACCAATTTGATGAGAGTTCTGTTAATTTTTT
ATCTAAAATTCCACTCCTAGGAGCTTTATTTCAAGGCGATCAAAGTGTCGATAATGCTACAGAAATTGTTTTCATCATAA
CCCCAGTAATTGTTGATAATAAAAACACCCATCCTTCCTTAAAAGATCTAGGATTTAAGCACTATGAACTCTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(50-102)

Bacterial type II and III secretion system protein (Secretin)

(286-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

67.511

99.371

0.671

Multiple sequence alignment