Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   AAH949_RS06700 Genome accession   NZ_CP155620
Coordinates   1332204..1332944 (+) Length   246 a.a.
NCBI ID   WP_243832579.1    Uniprot ID   -
Organism   Campylobacter sp. CCS1377     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1327204..1337944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH949_RS06680 (AAH949_06680) - 1327262..1328635 (+) 1374 WP_348518309.1 methyl-accepting chemotaxis protein -
  AAH949_RS06685 (AAH949_06685) lon 1328645..1331020 (-) 2376 WP_348518310.1 endopeptidase La -
  AAH949_RS06690 (AAH949_06690) bamD 1331036..1331674 (-) 639 WP_243832578.1 outer membrane protein assembly factor BamD -
  AAH949_RS06695 (AAH949_06695) fliW 1331812..1332201 (+) 390 WP_134238092.1 flagellar assembly protein FliW -
  AAH949_RS06700 (AAH949_06700) proC 1332204..1332944 (+) 741 WP_243832579.1 pyrroline-5-carboxylate reductase Machinery gene
  AAH949_RS06705 (AAH949_06705) - 1332941..1333261 (+) 321 WP_134238094.1 type II secretion system protein -
  AAH949_RS06710 (AAH949_06710) - 1333245..1333931 (+) 687 WP_348518311.1 hypothetical protein -
  AAH949_RS06715 (AAH949_06715) - 1333928..1334362 (+) 435 WP_348518312.1 hypothetical protein -
  AAH949_RS06720 (AAH949_06720) rpsR 1334387..1334647 (-) 261 WP_134238097.1 30S ribosomal protein S18 -
  AAH949_RS06725 (AAH949_06725) - 1334662..1335195 (-) 534 WP_348518313.1 single-stranded DNA-binding protein -
  AAH949_RS06730 (AAH949_06730) rpsF 1335210..1335584 (-) 375 WP_134238099.1 30S ribosomal protein S6 -
  AAH949_RS06735 (AAH949_06735) - 1335681..1336343 (-) 663 WP_348518314.1 hypothetical protein -
  AAH949_RS06740 (AAH949_06740) - 1336404..1337228 (-) 825 WP_134238101.1 inverse autotransporter beta domain-containing protein -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27143.44 Da        Isoelectric Point: 8.9545

>NTDB_id=998070 AAH949_RS06700 WP_243832579.1 1332204..1332944(+) (proC) [Campylobacter sp. CCS1377]
MMQNIYILGNGTMAKALACGLRDRYNITIVGRDEAKLQHLKEQNFQTLHYSKLDIQDKNIILAFKPYALKELASLFKNQA
RLLISVLANTSIEELQIIKAQNYARIMPNTAAKYKASSTPFVLKNSAFKDEIIDILNHFGTSYELNDEKLMNAATAISGC
APAFLALVAESIANAGVYEGLDKNLSLKLTQGLFQSFNALFTNNHPAIIKEDICSPAGITIKGVKILEEEGLRGTFFKAL
HASANK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=998070 AAH949_RS06700 WP_243832579.1 1332204..1332944(+) (proC) [Campylobacter sp. CCS1377]
ATCATGCAAAACATTTACATTCTTGGTAACGGAACCATGGCTAAAGCTTTAGCTTGTGGTTTGCGTGATCGTTATAATAT
TACCATTGTAGGCAGAGATGAAGCAAAACTCCAACACTTAAAAGAGCAAAATTTTCAAACTCTACACTACAGCAAATTAG
ATATACAAGATAAAAATATCATTCTAGCTTTTAAACCTTACGCACTTAAAGAGCTTGCTTCACTTTTTAAAAACCAAGCT
CGTTTGCTTATATCTGTTTTAGCCAATACAAGCATTGAGGAATTGCAAATTATTAAAGCGCAAAACTATGCAAGAATTAT
GCCAAATACAGCTGCTAAATACAAAGCCTCTTCTACTCCATTTGTTCTAAAAAACTCTGCATTTAAAGATGAAATTATAG
ACATTTTAAATCATTTTGGCACTTCTTATGAGTTAAATGATGAAAAATTAATGAACGCAGCAACAGCAATTAGCGGTTGT
GCTCCAGCCTTTCTAGCTTTAGTGGCTGAAAGTATTGCAAATGCTGGGGTTTATGAAGGACTAGATAAAAATTTAAGCCT
AAAACTTACCCAGGGACTTTTTCAAAGTTTTAATGCTTTATTTACAAATAATCATCCTGCTATAATCAAAGAAGATATCT
GCTCTCCAGCTGGCATTACAATTAAAGGTGTAAAGATTCTTGAAGAAGAAGGTTTAAGAGGAACTTTTTTTAAAGCTTTA
CACGCTAGTGCTAATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(148-245)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(5-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

64.876

98.374

0.638

Multiple sequence alignment