Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ELZ63_RS06255 Genome accession   NZ_LR134171
Coordinates   1261654..1263030 (-) Length   458 a.a.
NCBI ID   WP_005691269.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12699     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1256654..1268030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ63_RS06240 (NCTC12699_01244) lolA 1257729..1258346 (-) 618 WP_065245262.1 outer membrane lipoprotein chaperone LolA -
  ELZ63_RS06245 (NCTC12699_01245) - 1258364..1261093 (-) 2730 WP_065245261.1 DNA translocase FtsK -
  ELZ63_RS06250 (NCTC12699_01246) lrp 1261095..1261574 (-) 480 WP_005664572.1 leucine-responsive transcriptional regulator Lrp -
  ELZ63_RS06255 (NCTC12699_01247) radA/sms 1261654..1263030 (-) 1377 WP_005691269.1 DNA repair protein RadA Machinery gene
  ELZ63_RS06260 (NCTC12699_01248) - 1263153..1264199 (-) 1047 WP_065245260.1 inorganic triphosphatase -
  ELZ63_RS06265 (NCTC12699_01249) - 1264523..1265239 (-) 717 WP_065245259.1 DUF2063 domain-containing protein -
  ELZ63_RS06270 (NCTC12699_01250) - 1265229..1266152 (-) 924 WP_065245258.1 DUF692 family protein -
  ELZ63_RS06275 (NCTC12699_01251) - 1266212..1266499 (-) 288 WP_005647268.1 hypothetical protein -
  ELZ63_RS06280 (NCTC12699_01252) - 1266538..1266978 (-) 441 WP_005653243.1 DoxX family protein -
  ELZ63_RS06285 (NCTC12699_01253) - 1267201..1267881 (+) 681 WP_005647270.1 TIGR00153 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49397.99 Da        Isoelectric Point: 8.1109

>NTDB_id=998070 ELZ63_RS06255 WP_005691269.1 1261654..1263030(-) (radA/sms) [Haemophilus influenzae strain NCTC12699]
MAKAPKTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRLISTAKSKNDRFSGYAGETQAKIQTLSEISLQETPRFSSGFS
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAKNMTALYVTGEESLQQVAMRASRLGLPNDQLKMLSETSVEQI
CNLADQLKPQIIVVDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLL
LEGEADSRYRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEITSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLALLLAVLHRHGGLQMADQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPQDLVIFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIVPFGNKPKSAVENMQVFTVKKLTDALAVLDNL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=998070 ELZ63_RS06255 WP_005691269.1 1261654..1263030(-) (radA/sms) [Haemophilus influenzae strain NCTC12699]
ATGGCTAAAGCCCCGAAAACAGCTTATGTATGTAACGATTGTGGTGCGGAGTTTTCTCGTTGGCAAGGGCAATGTTCCGC
TTGTAAAGCGTGGAATACAATCACGGAAGTGCGGTTAATTTCCACGGCAAAATCAAAAAATGATCGTTTTAGTGGTTATG
CGGGGGAAACTCAGGCAAAAATTCAAACGCTCTCTGAAATTAGTTTGCAAGAAACGCCTCGTTTTTCCAGTGGTTTTAGT
GAATTAGATAGGGTTTTGGGCGGCGGGATCGTACCGGGGAGTGCGATTTTAATTGGAGGGCATCCTGGAGCAGGAAAAAG
TACATTGTTACTACAGGTTATGTGTGGTTTGGCAAAAAATATGACCGCACTTTATGTAACGGGAGAGGAATCATTACAAC
AGGTTGCGATGCGCGCAAGCCGATTGGGATTGCCAAATGATCAATTAAAAATGTTGTCAGAAACCTCTGTGGAACAGATT
TGTAATTTGGCGGATCAATTAAAACCGCAAATTATCGTGGTGGATTCTATCCAAGTAATGCATTTGGCAGATATTCAATC
ATCGCCAGGAAGTGTGGCACAAGTGCGTGAATGTGCTTCTTTCCTCACCCGTTATGCGAAAACTCGCCAAGTGGCGATTA
TTATGGTTGGACACGTTACGAAAGACGGAACCCTTGCAGGGCCTAAAGTGTTAGAGCATGCTATTGACTGTTCATTACTA
TTAGAAGGCGAAGCCGATTCTCGTTATCGTACTTTGCGTAGCCATAAAAACCGTTTTGGTGCAGTCAATGAATTAGGTGT
ATTTGGAATGACAGAGCAGGGTTTGCGCGAAGTGAAAAATCCATCGGCGATCTTTTTAAGTCGCGGAGATGAAATTACGT
CAGGCAGCTCCGTTATGGTGCTTTGGGAGGGTACTCGTCCTCTTTTAGTGGAAATTCAAGCCTTGGTGGATCATTCAATG
CTGGCAAATCCTCGCCGTGTTGCGGTGGGATTAGAGCAAAATCGCTTAGCGCTATTACTGGCGGTTTTACATAGACACGG
AGGTTTGCAAATGGCGGATCAAGATGTTTTTGTAAATGTGGTTGGTGGTGTAAAAGTCAGTGAAACCAGTGCGGATTTAG
CTTTGTTGCTTGCGTTAATTTCAAGTTTCCGTAATCGCCCTTTGCCGCAAGATTTAGTGATTTTTGGCGAAGTTGGATTA
GCGGGAGAAATTCGTCCTGTGCCAAGTGGACAAGAACGTATTAGCGAGGCTGCAAAACACGGTTTTAAACGTGCTATTGT
TCCTTTTGGTAACAAGCCGAAAAGTGCGGTCGAAAATATGCAGGTTTTTACTGTGAAAAAACTCACGGATGCGCTCGCTG
TGTTAGATAATTTATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(79-223)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.623

100

0.467
  radA Streptococcus mitis NCTC 12261

43.267

98.908

0.428
  radA Streptococcus mitis SK321

43.267

98.908

0.428
  radA Streptococcus pneumoniae Rx1

44.755

93.668

0.419
  radA Streptococcus pneumoniae D39

44.755

93.668

0.419
  radA Streptococcus pneumoniae R6

44.755

93.668

0.419
  radA Streptococcus pneumoniae TIGR4

44.755

93.668

0.419

Multiple sequence alignment