Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   AAH949_RS06245 Genome accession   NZ_CP155620
Coordinates   1239534..1240454 (+) Length   306 a.a.
NCBI ID   WP_348518254.1    Uniprot ID   A0AAU7E730
Organism   Campylobacter sp. CCS1377     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1221255..1239481 1239534..1240454 flank 53


Gene organization within MGE regions


Location: 1221255..1240454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH949_RS06160 (AAH949_06160) - 1221255..1222418 (+) 1164 WP_348518244.1 peptidoglycan DD-metalloendopeptidase family protein -
  AAH949_RS06165 (AAH949_06165) raiA 1222497..1223012 (+) 516 WP_134238004.1 ribosome-associated translation inhibitor RaiA -
  AAH949_RS06170 (AAH949_06170) - 1223039..1225567 (-) 2529 WP_348518245.1 hypothetical protein -
  AAH949_RS06175 (AAH949_06175) groES 1225746..1226006 (+) 261 WP_348518246.1 co-chaperone GroES -
  AAH949_RS06180 (AAH949_06180) groL 1226025..1227662 (+) 1638 WP_134238007.1 chaperonin GroEL -
  AAH949_RS06185 (AAH949_06185) - 1227787..1229337 (+) 1551 WP_348518247.1 glycosyltransferase -
  AAH949_RS06190 (AAH949_06190) - 1229341..1230498 (+) 1158 WP_134238009.1 glycosyltransferase -
  AAH949_RS06195 (AAH949_06195) - 1230495..1231472 (-) 978 WP_134238010.1 capsular polysaccharide synthesis protein -
  AAH949_RS06200 (AAH949_06200) - 1231538..1232707 (+) 1170 WP_348518248.1 glycosyltransferase family 2 protein -
  AAH949_RS06205 (AAH949_06205) - 1232701..1233768 (+) 1068 WP_348518249.1 beta-1,4-N-acetylgalactosaminyltransferase -
  AAH949_RS06210 (AAH949_06210) - 1233740..1234639 (-) 900 WP_348518250.1 glycosyltransferase family 2 protein -
  AAH949_RS06215 (AAH949_06215) - 1234723..1235490 (-) 768 Protein_1209 glycosyltransferase -
  AAH949_RS06220 (AAH949_06220) - 1235495..1236544 (-) 1050 WP_348518251.1 polysaccharide pyruvyl transferase family protein -
  AAH949_RS06225 (AAH949_06225) glf 1236668..1237782 (+) 1115 Protein_1211 UDP-galactopyranose mutase -
  AAH949_RS06230 (AAH949_06230) - 1237772..1237912 (+) 141 WP_348518252.1 hypothetical protein -
  AAH949_RS06235 (AAH949_06235) - 1237909..1238648 (+) 740 Protein_1213 DUF4422 domain-containing protein -
  AAH949_RS06240 (AAH949_06240) - 1238669..1239481 (-) 813 WP_348518253.1 glycosyltransferase family 2 protein -
  AAH949_RS06245 (AAH949_06245) waaF 1239534..1240454 (+) 921 WP_348518254.1 lipopolysaccharide heptosyltransferase II Regulator

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34839.14 Da        Isoelectric Point: 10.4143

>NTDB_id=998068 AAH949_RS06245 WP_348518254.1 1239534..1240454(+) (waaF) [Campylobacter sp. CCS1377]
MKIFINLPTWLGDAVMASAAIYTIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALKFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
DASYFARVAKEFSSTHKILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYALCKNISLLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPQIVINEAKNLLKI

Nucleotide


Download         Length: 921 bp        

>NTDB_id=998068 AAH949_RS06245 WP_348518254.1 1239534..1240454(+) (waaF) [Campylobacter sp. CCS1377]
ATGAAAATTTTTATCAATCTTCCTACTTGGCTTGGCGATGCAGTGATGGCTAGTGCGGCTATTTATACTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACGCTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACATCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAAATTTAAAGCTACTTCAAATGCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGTGCACATTTTGGAAGTGCGAAAAGATGG
GATGCAAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGTTCAACTCATAAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAACATTTTCTTTTAAAAGAAGGTATAAAAGCAAAAAATCTTTGTGGTAAAACCAGTATTT
ATGCTTTATGTAAAAATATATCCTTGCTTGATTTGCTCATCACAAACGATAGCGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTGAAAACGGTGGCTGTTTTTGGCTCTACTAAATTTAGTCAAACCTCTCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAAGTCTGTCCTTTAAAACACCATAAATGTATGAAAGATTTAAAACCAC
AAATCGTCATCAATGAAGCTAAAAATTTATTAAAAATTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(134-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.032

100

0.68

Multiple sequence alignment