Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ELZ63_RS01330 Genome accession   NZ_LR134171
Coordinates   265162..265764 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain NCTC12699     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 260162..270764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ63_RS01310 (NCTC12699_00258) - 260527..262197 (+) 1671 WP_040034472.1 fructose-specific PTS transporter subunit EIIC -
  ELZ63_RS01320 (NCTC12699_00260) secG 262745..263086 (-) 342 WP_005649335.1 preprotein translocase subunit SecG -
  ELZ63_RS01325 (NCTC12699_00261) - 263195..265150 (-) 1956 WP_061724242.1 DNA topoisomerase III -
  ELZ63_RS01330 (NCTC12699_00262) recR 265162..265764 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  ELZ63_RS01335 (NCTC12699_00263) - 265897..266226 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  ELZ63_RS01340 (NCTC12699_00264) - 266379..267224 (-) 846 WP_005656472.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  ELZ63_RS01345 (NCTC12699_00265) - 267297..269891 (-) 2595 WP_065245042.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=998037 ELZ63_RS01330 WP_005626527.1 265162..265764(-) (recR) [Haemophilus influenzae strain NCTC12699]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=998037 ELZ63_RS01330 WP_005626527.1 265162..265764(-) (recR) [Haemophilus influenzae strain NCTC12699]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCACAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTGGATGGTATTGGGCCTCGTGAAATTGGTTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAACCCAACTGTGGAAGGCGATGCAACAGCAAATTACATCGCTGAAATG
TGCCGCCAGCACAATATTAAAGTGAGTCGTATCGCTCATGGCATTCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43