Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABDX87_RS12400 Genome accession   NZ_CP155619
Coordinates   2791612..2792022 (-) Length   136 a.a.
NCBI ID   WP_074752373.1    Uniprot ID   -
Organism   Pseudomonas abietaniphila strain BHJ04     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2786612..2797022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDX87_RS12385 (ABDX87_12385) - 2788474..2790516 (-) 2043 WP_346833106.1 methyl-accepting chemotaxis protein -
  ABDX87_RS12390 (ABDX87_12390) - 2790646..2791185 (-) 540 WP_346833107.1 chemotaxis protein CheW -
  ABDX87_RS12395 (ABDX87_12395) pilH 2791202..2791567 (-) 366 WP_002551739.1 twitching motility response regulator PilH -
  ABDX87_RS12400 (ABDX87_12400) pilG 2791612..2792022 (-) 411 WP_074752373.1 twitching motility response regulator PilG Regulator
  ABDX87_RS12405 (ABDX87_12405) gshB 2792287..2793240 (+) 954 WP_346833108.1 glutathione synthase -
  ABDX87_RS12410 (ABDX87_12410) - 2793482..2794384 (+) 903 WP_346833109.1 energy transducer TonB -
  ABDX87_RS12415 (ABDX87_12415) - 2794631..2795200 (+) 570 WP_346833110.1 YqgE/AlgH family protein -
  ABDX87_RS12420 (ABDX87_12420) ruvX 2795200..2795640 (+) 441 WP_346833111.1 Holliday junction resolvase RuvX -
  ABDX87_RS12425 (ABDX87_12425) pyrR 2795734..2796258 (+) 525 WP_346833112.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15044.57 Da        Isoelectric Point: 8.5257

>NTDB_id=998034 ABDX87_RS12400 WP_074752373.1 2791612..2792022(-) (pilG) [Pseudomonas abietaniphila strain BHJ04]
MEQHSAPLKVMIIDDSRTIRRTAETLLKNVGCEVITAVDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFVAVEQQLS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=998034 ABDX87_RS12400 WP_074752373.1 2791612..2792022(-) (pilG) [Pseudomonas abietaniphila strain BHJ04]
ATGGAACAGCATTCAGCCCCATTGAAAGTGATGATCATCGACGACTCCCGAACGATTCGTCGCACCGCCGAGACCCTGCT
GAAAAACGTCGGCTGTGAAGTGATCACCGCAGTAGACGGCTTCGATGCGCTGGCCAAGATTGCTGATAATCATCCGAGAA
TCATATTTGTCGACATCATGATGCCCAGACTCGACGGGTATCAGACGTGCGCGTTGATCAAGAACAACCGGGCATTCAAG
TCTACGCCGGTGATCATGTTGTCCTCCAAGGACGGGCTGTTCGACAAAGCCAAGGGGCGAATTGTCGGTTCTGATCAGTT
TTTGACCAAACCGTTTAGCAAGGAAGAACTGCTCAGTGCGATCAAGGCTCATGTGCCAGGGTTCGTGGCAGTAGAACAAC
AACTATCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.4

91.912

0.684

Multiple sequence alignment