Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ELZ62_RS06165 Genome accession   NZ_LR134168
Coordinates   1227505..1228881 (+) Length   458 a.a.
NCBI ID   WP_015702420.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11394     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1222505..1233881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ62_RS06135 (NCTC11394_01217) - 1222639..1223319 (-) 681 WP_015702424.1 TIGR00153 family protein -
  ELZ62_RS06140 (NCTC11394_01218) - 1223543..1223983 (+) 441 WP_005653243.1 DoxX family protein -
  ELZ62_RS06145 (NCTC11394_01219) - 1224022..1224309 (+) 288 WP_015702423.1 membrane protein -
  ELZ62_RS06150 (NCTC11394_01220) - 1224369..1225292 (+) 924 WP_015702422.1 DUF692 family protein -
  ELZ62_RS06155 (NCTC11394_01221) - 1225282..1225998 (+) 717 WP_005693614.1 DUF2063 domain-containing protein -
  ELZ62_RS06160 (NCTC11394_01222) - 1226322..1227368 (+) 1047 WP_015702421.1 inorganic triphosphatase -
  ELZ62_RS06165 (NCTC11394_01223) radA/sms 1227505..1228881 (+) 1377 WP_015702420.1 DNA repair protein RadA Machinery gene
  ELZ62_RS06170 (NCTC11394_01224) lrp 1228961..1229440 (+) 480 WP_126507592.1 leucine-responsive transcriptional regulator Lrp -
  ELZ62_RS06175 (NCTC11394_01225) - 1229442..1232210 (+) 2769 WP_015702419.1 DNA translocase FtsK -
  ELZ62_RS06180 (NCTC11394_01226) lolA 1232228..1232845 (+) 618 WP_015702418.1 outer membrane lipoprotein chaperone LolA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49444.01 Da        Isoelectric Point: 8.1109

>NTDB_id=998012 ELZ62_RS06165 WP_015702420.1 1227505..1228881(+) (radA/sms) [Haemophilus influenzae strain NCTC11394]
MAKAPKTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRLISTAKSKNDRFSGYAGETQAKIQTLSEISLQETPRFSSGFS
ELDRVLGSGIVPGSAILIGGHPGAGKSTLLLQVMCGLAKNMTALYVTGEESLQQVAMRASRLGLPNDQLKMLSETSVEQI
CNLADQLKPQIIVVDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLL
LEGEADSRYRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEITSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMADQDVFVNVVGGVKVSETSADLALLLALISSFRNRPLPQDLVIFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIVPFGNKPKSAVENMQVFTVKKLTDALAVLDNL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=998012 ELZ62_RS06165 WP_015702420.1 1227505..1228881(+) (radA/sms) [Haemophilus influenzae strain NCTC11394]
ATGGCTAAAGCCCCGAAAACAGCTTATGTATGTAACGATTGTGGTGCGGAGTTTTCTCGTTGGCAAGGGCAATGTTCCGC
TTGTAAAGCGTGGAATACAATCACGGAAGTGCGCTTAATTTCCACGGCAAAATCAAAAAATGATCGTTTTAGTGGCTATG
CGGGGGAAACTCAGGCAAAAATTCAAACGCTCTCTGAAATTAGTTTGCAAGAAACGCCTCGTTTTTCCAGTGGTTTTAGT
GAATTAGATAGGGTACTGGGCAGCGGGATCGTACCGGGTAGTGCGATTTTAATTGGTGGGCATCCTGGAGCAGGGAAAAG
TACATTGTTACTACAGGTTATGTGTGGTTTGGCAAAAAATATGACCGCACTTTATGTAACGGGAGAGGAATCATTACAAC
AGGTTGCGATGCGCGCAAGCCGATTGGGATTGCCAAATGATCAATTAAAAATGTTGTCAGAAACCTCTGTGGAACAGATT
TGTAATTTAGCGGATCAATTAAAACCGCAAATTATCGTGGTGGATTCTATCCAAGTAATGCATTTGGCAGATATTCAATC
ATCGCCAGGCAGTGTAGCTCAAGTGCGTGAATGCGCTTCTTTCCTCACTCGTTATGCGAAAACTCGCCAAGTGGCGATTA
TTATGGTTGGACACGTTACGAAAGACGGAACCCTTGCAGGGCCTAAAGTGTTAGAGCATGCCATTGACTGTTCATTGTTA
TTAGAAGGCGAAGCCGATTCTCGTTATCGTACTTTGCGTAGTCATAAAAACCGTTTTGGTGCAGTCAATGAATTAGGTGT
ATTTGGAATGACAGAGCAGGGTTTGCGCGAAGTGAAAAATCCATCGGCGATCTTTTTAAGTCGTGGTGATGAGATTACAT
CGGGCAGCTCCGTTATGGTGCTTTGGGAGGGTACTCGCCCTCTTTTAGTGGAAATTCAAGCCTTGGTGGATCATTCAATG
CTGGCAAATCCTCGCCGTGTTGCGGTGGGATTAGAGCAAAATCGTTTGTCGTTGTTATTGGCTGTTTTACATAGACACGG
AGGTTTGCAAATGGCGGATCAAGATGTTTTTGTAAATGTGGTTGGTGGTGTAAAAGTCAGTGAAACCAGTGCGGATTTAG
CTTTGTTGCTTGCGTTAATTTCAAGTTTCCGTAATCGCCCTTTGCCGCAAGATTTAGTGATTTTTGGCGAAGTTGGATTA
GCGGGAGAAATTCGTCCTGTGCCAAGTGGACAGGAACGTATTAGCGAGGCTGCAAAACACGGTTTTAAACGTGCTATTGT
TCCTTTTGGTAACAAGCCGAAAAGTGCGGTCGAAAATATGCAGGTTTTTACTGTGAAAAAACTCACGGATGCGCTCGCTG
TGTTAGATAATTTATAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(85-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.623

100

0.467
  radA Streptococcus mitis NCTC 12261

43.267

98.908

0.428
  radA Streptococcus mitis SK321

43.267

98.908

0.428
  radA Streptococcus pneumoniae Rx1

44.755

93.668

0.419
  radA Streptococcus pneumoniae D39

44.755

93.668

0.419
  radA Streptococcus pneumoniae R6

44.755

93.668

0.419
  radA Streptococcus pneumoniae TIGR4

44.755

93.668

0.419

Multiple sequence alignment