Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ELZ62_RS03620 Genome accession   NZ_LR134168
Coordinates   700631..702823 (+) Length   730 a.a.
NCBI ID   WP_015701582.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC11394     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 695631..707823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ62_RS03595 (NCTC11394_00713) napA 695847..698330 (-) 2484 WP_015701586.1 nitrate reductase catalytic subunit NapA -
  ELZ62_RS03600 (NCTC11394_00714) - 698367..698648 (-) 282 WP_005688960.1 chaperone NapD -
  ELZ62_RS03605 (NCTC11394_00715) napF 698641..699171 (-) 531 WP_005688962.1 ferredoxin-type protein NapF -
  ELZ62_RS03610 (NCTC11394_00716) - 699377..699721 (-) 345 WP_015701584.1 YggL family protein -
  ELZ62_RS03615 (NCTC11394_00717) trmB 699806..700546 (-) 741 WP_015701583.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ELZ62_RS03620 (NCTC11394_00718) priA 700631..702823 (+) 2193 WP_015701582.1 primosomal protein N' Machinery gene
  ELZ62_RS03625 (NCTC11394_00719) - 702864..703910 (-) 1047 WP_015701581.1 AI-2E family transporter -
  ELZ62_RS03630 (NCTC11394_00720) glnB 703910..704248 (-) 339 WP_005654045.1 nitrogen regulatory protein P-II -
  ELZ62_RS03635 (NCTC11394_00721) mog 704250..704843 (-) 594 WP_015701580.1 molybdopterin adenylyltransferase -
  ELZ62_RS03640 (NCTC11394_00722) - 704926..705282 (-) 357 WP_005632174.1 diacylglycerol kinase -
  ELZ62_RS03645 (NCTC11394_00723) relA 705297..707528 (-) 2232 WP_015701579.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 730 a.a.        Molecular weight: 82225.42 Da        Isoelectric Point: 8.9657

>NTDB_id=997998 ELZ62_RS03620 WP_015701582.1 700631..702823(+) (priA) [Haemophilus influenzae strain NCTC11394]
MKIVRVALAVPLPRLFDYFVPDDVSLQIGMRVLVPFGTQKRVAIVADFPTKSDVPENKLKAIIHALDLAPLFTPIYWDWL
HWAANYYQAGLGDVLFQALPVKLRNGESAVKNDRTFWRITDAGKNALEQGELKRSKKQVEALQCLSETDLEKGNNNFSSA
IWSALKAKGFIEEITIQTNPLSWQQRLGNNPIVNAENRLTLNKQQALAFSQLLFHSGFNVWLLDGVTGSGKTEIYLQYIE
EILKSGKQVLVLVPEIGLTPQTVQRFKARFNVEIDVLHSNLTDTQRLYVWDRARSGQSAIVIGTRSALFTQFSNLGAIIL
DEEQDASYKQQDSWRYHARDLAIVLAQKLNISVLMGSATPSLESINNVQNGKYQHLVLSKRAGNSTALRHFVVDLKNQNI
QNGLSKPLLERMKVHLEKGNQVLLFLNRRGFAPVLLCHECGWIAQCPHCEKPYTYHQHQNVLRCHHCGAQKTIPRQCGDC
GSTHLVTTGLGTEQLEETLKTLFPHYSVARIDRDSTACKGKLEGYLEDIQQGKSQILIGTQMLAKGHHFPNVTLVALVNV
DSALFSLDFRAEERLAQLYIQVAGRAGRADKQGEVVLQTHYPDHPLLTTLLANGYQAFAKETLQLRHSMGLPPFTFQALF
KAQARHSELAENCLSQIADFFQSKQITGLQMLGPMPAPFSKKAGQYRWQLLLQHPSRMTLQKALREYQQAELEKNSQVRL
ILDVDPQDLS

Nucleotide


Download         Length: 2193 bp        

>NTDB_id=997998 ELZ62_RS03620 WP_015701582.1 700631..702823(+) (priA) [Haemophilus influenzae strain NCTC11394]
ATGAAAATTGTCCGAGTGGCACTGGCTGTGCCGCTTCCTCGCTTATTTGATTATTTCGTCCCCGATGATGTTTCATTACA
AATCGGTATGCGTGTTCTTGTGCCTTTTGGCACCCAAAAACGTGTCGCCATTGTGGCTGATTTTCCGACAAAATCGGACG
TGCCAGAAAATAAACTCAAAGCAATTATTCACGCCTTAGATTTAGCCCCACTTTTTACGCCCATTTATTGGGATTGGCTT
CATTGGGCAGCAAATTATTATCAAGCGGGATTAGGCGATGTGTTATTTCAAGCCTTGCCTGTGAAATTGCGTAACGGCGA
AAGTGCGGTAAAAAATGACCGCACTTTTTGGCGAATTACGGATGCGGGGAAAAATGCCCTTGAACAAGGCGAATTAAAAC
GCTCGAAAAAGCAAGTTGAAGCCCTACAATGCTTATCTGAAACTGATCTTGAAAAAGGCAATAATAATTTTTCCTCTGCC
ATTTGGTCAGCCTTAAAAGCCAAAGGGTTTATTGAGGAAATTACTATCCAAACAAATCCCCTAAGCTGGCAACAAAGATT
AGGCAATAACCCAATTGTCAATGCTGAAAATCGTTTAACCTTAAATAAGCAGCAAGCCTTAGCCTTCAGCCAACTGCTCT
TCCATTCTGGTTTCAATGTATGGCTGCTCGATGGCGTGACTGGTTCAGGTAAAACAGAAATTTATCTGCAGTATATTGAA
GAAATTTTAAAATCGGGTAAGCAAGTATTAGTGCTTGTACCCGAAATCGGGCTAACACCTCAAACGGTACAACGTTTCAA
AGCGCGTTTCAATGTAGAAATTGATGTACTGCATTCTAATTTAACCGATACGCAACGGCTTTATGTATGGGATCGCGCCC
GCTCTGGACAAAGTGCTATTGTGATTGGCACTAGATCGGCATTGTTCACGCAATTTTCTAATCTTGGTGCAATTATTTTG
GACGAGGAACAGGATGCGTCTTACAAACAGCAAGACAGTTGGCGTTATCACGCACGAGATTTAGCAATCGTGCTTGCTCA
AAAACTGAACATTTCAGTATTAATGGGTTCTGCCACGCCAAGTTTAGAAAGTATTAATAATGTACAAAACGGCAAATACC
AACATTTAGTTTTATCAAAAAGAGCGGGAAATTCTACCGCACTTCGTCATTTCGTTGTTGATTTGAAAAATCAAAACATA
CAAAACGGGCTTTCGAAACCCTTATTAGAACGGATGAAAGTTCACCTCGAAAAAGGCAATCAAGTATTGCTTTTCTTAAA
TCGTCGTGGCTTTGCGCCCGTATTGCTTTGCCATGAATGTGGTTGGATTGCACAATGCCCTCATTGTGAAAAACCTTATA
CCTATCATCAGCATCAAAATGTATTGCGTTGTCATCATTGTGGCGCGCAAAAAACTATTCCTCGCCAATGTGGCGATTGC
GGTTCTACCCATTTAGTTACTACTGGTCTCGGCACAGAGCAATTAGAAGAAACCTTGAAAACGCTATTTCCTCATTATTC
TGTAGCGCGAATCGACCGCGATAGCACGGCGTGTAAAGGAAAATTGGAAGGTTATTTAGAAGATATTCAACAAGGCAAAA
GCCAAATTTTGATTGGCACACAAATGCTTGCGAAAGGACATCATTTTCCGAATGTTACTCTCGTTGCCTTAGTGAATGTA
GATAGTGCATTATTTTCACTGGATTTTCGTGCAGAAGAACGTTTAGCTCAACTTTATATTCAAGTTGCTGGACGTGCAGG
ACGTGCCGATAAACAAGGTGAAGTGGTGCTACAAACACATTATCCAGATCATCCTTTACTCACTACATTATTAGCGAATG
GCTACCAAGCTTTTGCAAAAGAAACCTTACAATTACGCCATTCAATGGGATTGCCGCCTTTCACTTTTCAGGCGTTATTC
AAAGCACAGGCTCGACATTCTGAGCTTGCAGAAAATTGCTTAAGCCAAATTGCAGATTTTTTTCAATCGAAGCAAATTAC
GGGATTACAAATGCTTGGCCCAATGCCTGCACCGTTCAGCAAAAAAGCGGGGCAATATCGCTGGCAGTTATTATTGCAGC
ATCCATCAAGAATGACGTTGCAAAAAGCATTAAGAGAATATCAACAAGCCGAACTAGAAAAAAACAGCCAAGTGCGGTTA
ATTTTGGACGTCGATCCGCAAGACTTATCATAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(204-366)

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-100)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-471)

Primosomal protein N C-terminal domain (PriA_C)

(633-726)

Helicase conserved C-terminal domain (Helicase_C)

(524-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

44.086

100

0.449

Multiple sequence alignment