Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ELZ62_RS03115 Genome accession   NZ_LR134168
Coordinates   604984..605586 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain NCTC11394     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 599984..610586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ62_RS03095 (NCTC11394_00611) - 600889..602115 (-) 1227 WP_015701652.1 integrase arm-type DNA-binding domain-containing protein -
  ELZ62_RS03105 (NCTC11394_00613) secG 602563..602904 (-) 342 WP_005649335.1 preprotein translocase subunit SecG -
  ELZ62_RS03110 (NCTC11394_00614) - 603013..604968 (-) 1956 WP_015701651.1 DNA topoisomerase III -
  ELZ62_RS03115 (NCTC11394_00615) recR 604984..605586 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  ELZ62_RS03120 (NCTC11394_00616) - 605719..606048 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  ELZ62_RS03125 (NCTC11394_00617) - 606201..607046 (-) 846 WP_015701650.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  ELZ62_RS03130 (NCTC11394_00618) - 607123..609717 (-) 2595 WP_015701649.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=997988 ELZ62_RS03115 WP_005626527.1 604984..605586(-) (recR) [Haemophilus influenzae strain NCTC11394]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=997988 ELZ62_RS03115 WP_005626527.1 604984..605586(-) (recR) [Haemophilus influenzae strain NCTC11394]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGTCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCTGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACGGTGGAAGGCGATGCTACAGCAAACTACATTGCTGAAATG
TGCCGCCAACACAATATTAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43