Detailed information NTG0997955

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EL040_RS21575
• Genome accession: NZ_LR134152
• Coordinates: 4448033..4449058 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain NCTC9104
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4443033..4454058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL040_RS21555 (NCTC9104_04390)	metJ	4444094..4444411 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
EL040_RS21560 (NCTC9104_04391)	yiiX	4444595..4445203 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
EL040_RS21565 (NCTC9104_04392)	rpmE	4445264..4445476 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
EL040_RS21570 (NCTC9104_04393)	priA	4445679..4447877 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
EL040_RS21575 (NCTC9104_04394)	cytR	4448033..4449058 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
EL040_RS21580 (NCTC9104_04395)	ftsN	4449150..4450109 (+)	960	WP_000068828.1	cell division protein FtsN	-
EL040_RS21585 (NCTC9104_04396)	hslV	4450202..4450732 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
EL040_RS21590 (NCTC9104_04397)	hslU	4450742..4452073 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
EL040_RS21595	menA	4452140..4453068 (+)	929	Protein_4239	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
EL040_RS21600 (NCTC9104_04400)	rraA	4453161..4453646 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
EL040_RS21605 (NCTC9104_04401)	zapB	4453731..4453976 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=997955 EL040_RS21575 WP_000644904.1 4448033..4449058(+) (cytR) [Escherichia coli strain NCTC9104]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=997955 EL040_RS21575 WP_000644904.1 4448033..4449058(+) (cytR) [Escherichia coli strain NCTC9104]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628