Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AAHK14_RS09100 Genome accession   NZ_CP155576
Coordinates   1820589..1821527 (+) Length   312 a.a.
NCBI ID   WP_194092598.1    Uniprot ID   -
Organism   Moraxella sp. K1664     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1815589..1826527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHK14_RS09085 (AAHK14_09085) - 1815866..1818142 (+) 2277 WP_156065171.1 primosomal protein N' -
  AAHK14_RS09090 (AAHK14_09090) - 1818195..1818713 (-) 519 WP_172823650.1 transporter substrate-binding domain-containing protein -
  AAHK14_RS09095 (AAHK14_09095) - 1819265..1820296 (-) 1032 WP_083108308.1 ABC transporter substrate-binding protein -
  AAHK14_RS09100 (AAHK14_09100) pilA 1820589..1821527 (+) 939 WP_194092598.1 signal recognition particle-docking protein FtsY Machinery gene
  AAHK14_RS09105 (AAHK14_09105) - 1821584..1822111 (+) 528 WP_066886496.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AAHK14_RS09110 (AAHK14_09110) msrAB 1822436..1824121 (-) 1686 WP_194092599.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  AAHK14_RS09115 (AAHK14_09115) ahcY 1824215..1825588 (-) 1374 WP_194092600.1 adenosylhomocysteinase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 33355.31 Da        Isoelectric Point: 4.8826

>NTDB_id=997923 AAHK14_RS09100 WP_194092598.1 1820589..1821527(+) (pilA) [Moraxella sp. K1664]
MSENKSGFFARMKAGLSKSSKNLSEGLMNALVGGKEIDDELLEEVEDQLLVADIGVDATNRIITSLTEQTARGDLIYSHS
LYKALKKELVNILEPKVAPLVIDTTKKPFVILMVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQVWGE
RNGISVVAQGQGSDSASVIFDAMQSAKAKGIDVLIADTAGRLQNKTYLMNELEKVIRVMKKADESAPHECMIVLDAGTGQ
NAISQINLFGEVAPLSGVTITKLDGTAKGGVVFNVAQTTDVPIRFIGVGERIDDLQPFDSKEFVDALIGEEK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=997923 AAHK14_RS09100 WP_194092598.1 1820589..1821527(+) (pilA) [Moraxella sp. K1664]
ATGAGCGAGAATAAAAGCGGATTTTTTGCCCGCATGAAAGCAGGATTGTCCAAATCCAGTAAGAATTTATCAGAAGGTCT
GATGAATGCCTTAGTCGGTGGCAAAGAAATTGATGATGAGTTGTTAGAAGAAGTCGAAGACCAGCTTCTTGTGGCGGACA
TTGGCGTGGATGCGACCAACAGGATTATCACAAGCCTGACCGAGCAGACGGCACGGGGCGATTTGATTTATTCGCATTCG
TTATATAAAGCCCTAAAAAAGGAATTGGTGAACATCTTAGAGCCCAAGGTTGCACCACTTGTCATTGACACAACCAAAAA
GCCTTTTGTCATCTTAATGGTTGGGGTTAATGGCGTGGGTAAAACGACAACCATTGGTAAACTTGCCAAACGCTTACAAG
GTGAGGGCAAATCGGTCATGTTGGCGGCAGGTGATACTTTTCGTGCAGCGGCCACCGAGCAACTGCAAGTTTGGGGTGAA
CGAAACGGCATTTCTGTGGTGGCACAAGGACAAGGTTCAGACAGTGCATCGGTGATTTTTGATGCCATGCAGTCTGCCAA
AGCCAAAGGCATTGATGTGCTGATTGCTGACACCGCAGGGCGACTACAAAACAAGACTTATCTTATGAATGAGCTTGAAA
AAGTCATTCGTGTCATGAAAAAAGCAGATGAGAGTGCCCCGCATGAGTGTATGATTGTGCTAGATGCTGGTACAGGTCAA
AATGCCATCAGTCAGATTAATCTGTTTGGCGAGGTTGCCCCATTGTCAGGTGTTACCATCACCAAGCTAGATGGCACAGC
AAAAGGGGGTGTGGTTTTTAATGTCGCCCAAACCACCGACGTGCCCATTCGTTTTATTGGGGTGGGTGAACGTATTGATG
ATTTACAGCCCTTTGATTCAAAAGAATTTGTAGATGCACTCATCGGCGAGGAAAAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(23-89)

SRP54-type protein, GTPase domain (SRP54)

(108-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.98

98.077

0.5

Multiple sequence alignment