Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | QMG85_RS05895 | Genome accession | NZ_AP027162 |
| Coordinates | 1222059..1222688 (+) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain EH031 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1209556..1247883 | 1222059..1222688 | within | 0 |
Gene organization within MGE regions
Location: 1209556..1247883
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG85_RS05845 (BEL031_1124) | uup | 1210886..1212793 (+) | 1908 | WP_000053122.1 | ABC transporter ATP-binding protein | - |
| QMG85_RS05850 (BEL031_1125) | pqiA | 1212923..1214176 (+) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| QMG85_RS05855 (BEL031_1126) | pqiB | 1214181..1215821 (+) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| QMG85_RS05860 (BEL031_1127) | pqiC | 1215818..1216381 (+) | 564 | WP_000759122.1 | membrane integrity-associated transporter subunit PqiC | - |
| QMG85_RS05865 (BEL031_1128) | rmf | 1216637..1216804 (+) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| QMG85_RS05870 (BEL031_1129) | fabA | 1216874..1217392 (-) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| QMG85_RS05875 (BEL031_1130) | ycbZ | 1217461..1219221 (-) | 1761 | WP_000156528.1 | Lon protease family protein | - |
| QMG85_RS05880 (BEL031_1131) | matP | 1219407..1219859 (+) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| QMG85_RS05885 (BEL031_1132) | ompA | 1219934..1220974 (-) | 1041 | WP_000750416.1 | porin OmpA | - |
| QMG85_RS05890 (BEL031_1133) | sulA | 1221331..1221840 (-) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| QMG85_RS05895 (BEL031_1134) | sxy/tfoX | 1222059..1222688 (+) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| QMG85_RS05900 (BEL031_1135) | yccS | 1222651..1224813 (-) | 2163 | WP_000875023.1 | YccS family putative transporter | - |
| QMG85_RS05905 (BEL031_1136) | yccF | 1224823..1225269 (-) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| QMG85_RS05910 (BEL031_1137) | helD | 1225392..1227446 (+) | 2055 | WP_001297106.1 | DNA helicase IV | - |
| QMG85_RS05915 (BEL031_1138) | mgsA | 1227478..1227936 (-) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| QMG85_RS05920 (BEL031_1139) | yccT | 1228032..1228694 (-) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| QMG85_RS05925 (BEL031_1140) | yccU | 1228867..1229280 (+) | 414 | WP_000665217.1 | CoA-binding protein | - |
| QMG85_RS05930 (BEL031_1141) | hspQ | 1229325..1229642 (-) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| QMG85_RS05935 (BEL031_1142) | rlmI | 1229700..1230890 (-) | 1191 | WP_000116301.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| QMG85_RS05940 (BEL031_1143) | yccX | 1230985..1231263 (+) | 279 | WP_000048244.1 | acylphosphatase | - |
| QMG85_RS05945 (BEL031_1144) | tusE | 1231260..1231589 (-) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| QMG85_RS05950 (BEL031_1145) | yccA | 1231680..1232339 (-) | 660 | WP_000375138.1 | FtsH protease modulator YccA | - |
| QMG85_RS05955 (BEL031_1146) | - | 1232747..1233766 (-) | 1020 | WP_099356167.1 | tyrosine-type recombinase/integrase | - |
| QMG85_RS05960 (BEL031_1147) | - | 1233744..1233986 (-) | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| QMG85_RS05965 (BEL031_1148) | - | 1234054..1236504 (-) | 2451 | WP_000048499.1 | exonuclease | - |
| QMG85_RS05970 | - | 1236599..1236787 (-) | 189 | WP_000199475.1 | DUF1482 family protein | - |
| QMG85_RS05975 (BEL031_1149) | dicB | 1236784..1236972 (-) | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| QMG85_RS05980 (BEL031_1150) | - | 1237373..1237537 (+) | 165 | WP_001331716.1 | hypothetical protein | - |
| QMG85_RS05985 (BEL031_1151) | ydfC | 1237541..1237759 (-) | 219 | WP_001171921.1 | protein YdfC | - |
| QMG85_RS05990 | - | 1237831..1238130 (-) | 300 | WP_012817750.1 | hypothetical protein | - |
| QMG85_RS05995 (BEL031_1153) | - | 1238466..1238768 (+) | 303 | WP_000692026.1 | type II toxin-antitoxin system HigB family toxin | - |
| QMG85_RS06000 (BEL031_1154) | - | 1238771..1239130 (+) | 360 | WP_001022415.1 | helix-turn-helix domain-containing protein | - |
| QMG85_RS06005 (BEL031_1155) | - | 1239177..1239569 (-) | 393 | WP_000578360.1 | helix-turn-helix domain-containing protein | - |
| QMG85_RS06010 (BEL031_1156) | - | 1239696..1239956 (+) | 261 | WP_001172789.1 | YdaS family helix-turn-helix protein | - |
| QMG85_RS06015 (BEL031_1157) | - | 1239953..1240390 (+) | 438 | WP_000693932.1 | toxin YdaT family protein | - |
| QMG85_RS06020 (BEL031_1158) | - | 1240477..1241487 (+) | 1011 | WP_000729535.1 | DUF1376 domain-containing protein | - |
| QMG85_RS06025 (BEL031_1159) | - | 1241480..1241941 (+) | 462 | WP_000139444.1 | replication protein P | - |
| QMG85_RS06030 (BEL031_1160) | - | 1241975..1242700 (+) | 726 | WP_000450641.1 | DUF1627 domain-containing protein | - |
| QMG85_RS06035 (BEL031_1161) | - | 1242716..1243108 (+) | 393 | WP_001040234.1 | DUF977 family protein | - |
| QMG85_RS06040 (BEL031_1162) | - | 1243105..1243401 (+) | 297 | WP_001266133.1 | DUF4406 domain-containing protein | - |
| QMG85_RS06045 (BEL031_1163) | - | 1243398..1243859 (+) | 462 | WP_001209480.1 | sigma-E factor regulatory protein RseB domain-containing protein | - |
| QMG85_RS06050 (BEL031_1164) | - | 1243837..1244193 (+) | 357 | WP_000403783.1 | hypothetical protein | - |
| QMG85_RS06055 (BEL031_1165) | - | 1244244..1244456 (+) | 213 | WP_000935422.1 | hypothetical protein | - |
| QMG85_RS06060 (BEL031_1166) | - | 1244490..1244672 (+) | 183 | WP_001224662.1 | hypothetical protein | - |
| QMG85_RS06065 (BEL031_1167) | - | 1244665..1244841 (+) | 177 | WP_000753069.1 | hypothetical protein | - |
| QMG85_RS06070 (BEL031_1168) | - | 1244838..1245335 (+) | 498 | Protein_1190 | ead/Ea22-like family protein | - |
| QMG85_RS06075 (BEL031_1169) | - | 1245561..1245779 (+) | 219 | WP_000209152.1 | DUF4014 family protein | - |
| QMG85_RS06080 (BEL031_1170) | - | 1245781..1246146 (+) | 366 | WP_001229296.1 | HNH endonuclease signature motif containing protein | - |
| QMG85_RS06085 (BEL031_1171) | - | 1246143..1246487 (+) | 345 | WP_000206830.1 | hypothetical protein | - |
| QMG85_RS06090 (BEL031_1172) | - | 1246692..1246991 (-) | 300 | WP_000220601.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| QMG85_RS06095 (BEL031_1173) | - | 1246997..1247254 (-) | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| QMG85_RS06100 | - | 1247390..1247662 (+) | 273 | WP_001342259.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=99791 QMG85_RS05895 WP_000839153.1 1222059..1222688(+) (sxy/tfoX) [Escherichia coli strain EH031]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=99791 QMG85_RS05895 WP_000839153.1 1222059..1222688(+) (sxy/tfoX) [Escherichia coli strain EH031]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |