Detailed information NTG0997905

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EL040_RS04940
• Genome accession: NZ_LR134152
• Coordinates: 1027198..1028190 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NCTC9104
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1022198..1033190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL040_RS04910 (NCTC9104_01009)	ispD	1022260..1022970 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EL040_RS04915 (NCTC9104_01010)	ispF	1022970..1023449 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EL040_RS04920 (NCTC9104_01011)	truD	1023446..1024495 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
EL040_RS04925 (NCTC9104_01013)	surE	1024476..1025236 (+)	761	Protein_972	5'/3'-nucleotidase SurE	-
EL040_RS04930 (NCTC9104_01014)	pcm	1025230..1025856 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EL040_RS04935 (NCTC9104_01015)	nlpD	1026041..1027135 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EL040_RS04940 (NCTC9104_01016)	rpoS	1027198..1028190 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EL040_RS04945 (NCTC9104_01017)	ygbN	1028284..1029648 (-)	1365	WP_000104459.1	GntP family transporter	-
EL040_RS04950 (NCTC9104_01018)	ygbM	1029737..1030513 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
EL040_RS04955 (NCTC9104_01019)	ygbL	1030518..1031156 (-)	639	WP_001278994.1	aldolase	-
EL040_RS04960 (NCTC9104_01020)	otnK	1031153..1032415 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=997905 EL040_RS04940 WP_000081550.1 1027198..1028190(+) (rpoS) [Escherichia coli strain NCTC9104]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=997905 EL040_RS04940 WP_000081550.1 1027198..1028190(+) (rpoS) [Escherichia coli strain NCTC9104]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715