Detailed information NTG0997853

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: SMWOGL2_RS09800
• Genome accession: NZ_CP155572
• Coordinates: 2107838..2108755 (+)
• Length: 305 a.a.
• NCBI ID: WP_084575462.1
• Uniprot ID: -
• Organism: Sporomusa malonica strain DSM 5090
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2102838..2113755

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMWOGL2_RS09790 (SMWOGL2_19670)	-	2103854..2104114 (+)	261	WP_084575463.1	stage V sporulation protein S	-
SMWOGL2_RS09795 (SMWOGL2_19680)	smc	2104244..2107801 (+)	3558	WP_084575521.1	chromosome segregation protein SMC	-
SMWOGL2_RS09800 (SMWOGL2_19690)	pilA	2107838..2108755 (+)	918	WP_084575462.1	signal recognition particle-docking protein FtsY	Machinery gene
SMWOGL2_RS09805 (SMWOGL2_19700)	ylxM	2108836..2109204 (+)	369	WP_245823918.1	YlxM family DNA-binding protein	-
SMWOGL2_RS09810 (SMWOGL2_19710)	ffh	2109212..2110552 (+)	1341	WP_084575461.1	signal recognition particle protein	-
SMWOGL2_RS09815 (SMWOGL2_19720)	rpsP	2110607..2110888 (+)	282	WP_084575460.1	30S ribosomal protein S16	-
SMWOGL2_RS09820 (SMWOGL2_19730)	-	2110910..2111137 (+)	228	WP_084575459.1	KH domain-containing protein	-
SMWOGL2_RS09825 (SMWOGL2_19740)	-	2111175..2111591 (+)	417	WP_245823916.1	YlqD family protein	-
SMWOGL2_RS09830 (SMWOGL2_19750)	rimM	2111563..2112096 (+)	534	WP_084575458.1	ribosome maturation factor RimM	-
SMWOGL2_RS09835 (SMWOGL2_19760)	trmD	2112109..2112855 (+)	747	WP_084575457.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
SMWOGL2_RS09840 (SMWOGL2_19770)	-	2112858..2113436 (+)	579	WP_084575456.1	RNA methyltransferase	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 32983.07 Da
• Isoelectric Point: 5.4766

>NTDB_id=997853 SMWOGL2_RS09800 WP_084575462.1 2107838..2108755(+) (pilA) [Sporomusa malonica strain DSM 5090]
MGFFDKLKAGLEKTRKSFTEKIEQLVIGYATIDDEFLDDLEAVLLSADVGVSTTAKLMTEIRSGIKSKEINYPEDLKPFL
QAKISVMLLREPQVEQDIHEPPVVMLIVGVNGVGKTTTIGKLASYYHEAGKKVLIAAGDTFRAAAIDQLEIWGQRTNTEV
IKHAEGSDPAAVAFDAVQAAKARRADIVIIDTAGRLHTKSNLMEELKKINRVIAKEIPDAPHETLLVLDATTGQNAINQA
KLFGDAVKLSGVVLTKLDGTAKGGVVIAIKNELNLPVKWVGVGEGVNDLRPFDPAEFAAALFADK

Nucleotide

• Length: 918 bp

>NTDB_id=997853 SMWOGL2_RS09800 WP_084575462.1 2107838..2108755(+) (pilA) [Sporomusa malonica strain DSM 5090]
ATGGGATTTTTTGATAAGTTGAAAGCTGGTTTGGAAAAAACCAGAAAAAGTTTTACTGAAAAGATTGAGCAGTTGGTTAT
CGGTTATGCAACCATTGATGACGAGTTTTTGGATGATTTAGAGGCTGTACTGCTATCGGCAGATGTCGGTGTGTCAACTA
CTGCTAAACTAATGACTGAAATTCGTAGTGGTATTAAAAGCAAAGAGATTAATTATCCTGAGGATTTAAAGCCCTTTTTA
CAAGCTAAAATCAGTGTTATGCTGCTTCGAGAACCCCAAGTTGAACAAGATATCCATGAACCGCCGGTAGTAATGTTGAT
CGTTGGCGTGAACGGGGTTGGGAAAACAACTACTATTGGTAAGCTAGCCAGCTATTATCATGAAGCTGGGAAAAAAGTAC
TTATTGCTGCTGGTGACACCTTTCGGGCAGCCGCTATTGATCAGCTCGAAATCTGGGGACAACGGACAAATACTGAAGTT
ATTAAGCATGCTGAAGGCTCTGATCCGGCAGCAGTGGCTTTTGATGCTGTACAGGCTGCCAAGGCCCGTAGAGCGGATAT
AGTTATTATTGATACAGCCGGACGCCTGCATACTAAATCTAACTTAATGGAAGAGCTAAAGAAGATTAACAGAGTAATAG
CCAAGGAAATACCGGATGCACCGCACGAGACTTTATTAGTGCTTGACGCTACTACCGGTCAGAATGCCATTAATCAAGCC
AAATTGTTCGGTGATGCTGTTAAACTTTCTGGTGTAGTGTTGACTAAACTAGACGGTACGGCTAAAGGCGGGGTGGTAAT
TGCTATTAAAAATGAACTTAATCTGCCTGTTAAATGGGTAGGTGTGGGAGAAGGGGTCAATGACCTTCGACCTTTTGATC
CTGCTGAATTTGCAGCTGCTTTGTTTGCCGACAAGTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (103-302)

• SRP54-type protein, helical bundle domain (SRP54_N) (18-81)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.013	99.672	0.489