Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ELZ51_RS09325 Genome accession   NZ_LR134094
Coordinates   1858327..1861152 (-) Length   941 a.a.
NCBI ID   WP_126427635.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1853327..1866152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS09290 (NCTC4669_01958) nusB 1853622..1854071 (-) 450 WP_003052643.1 transcription antitermination factor NusB -
  ELZ51_RS09295 (NCTC4669_01959) - 1854064..1854453 (-) 390 WP_003052647.1 Asp23/Gls24 family envelope stress response protein -
  ELZ51_RS09300 (NCTC4669_01960) efp 1854499..1855056 (-) 558 WP_002993230.1 elongation factor P -
  ELZ51_RS09305 (NCTC4669_01961) - 1855144..1855611 (-) 468 WP_003052653.1 deoxycytidylate deaminase -
  ELZ51_RS09310 (NCTC4669_01962) - 1855645..1856718 (-) 1074 WP_126427194.1 M24 family metallopeptidase -
  ELZ51_RS09315 (NCTC4669_01964) - 1857087..1857836 (+) 750 WP_232009583.1 excalibur calcium-binding domain-containing protein -
  ELZ51_RS09325 (NCTC4669_01966) uvrA 1858327..1861152 (-) 2826 WP_126427635.1 excinuclease ABC subunit UvrA Machinery gene
  ELZ51_RS09330 (NCTC4669_01967) prx 1861382..1861564 (-) 183 WP_126427196.1 Paratox Regulator
  ELZ51_RS09335 (NCTC4669_01968) spel 1861680..1862468 (-) 789 WP_126427198.1 streptococcal pyrogenic exotoxin SpeL -
  ELZ51_RS09340 (NCTC4669_01969) spem 1862747..1863460 (-) 714 WP_126427200.1 streptococcal pyrogenic exotoxin SpeM -
  ELZ51_RS09345 (NCTC4669_01970) - 1863669..1864229 (-) 561 WP_011018106.1 GNAT family N-acetyltransferase -
  ELZ51_RS09350 (NCTC4669_01971) - 1864262..1864426 (-) 165 WP_003051631.1 hypothetical protein -
  ELZ51_RS09355 (NCTC4669_01972) - 1864577..1865794 (-) 1218 WP_126426068.1 peptidoglycan amidohydrolase family protein -
  ELZ51_RS09360 (NCTC4669_01974) - 1865913..1866140 (-) 228 WP_126427202.1 phage holin -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103889.18 Da        Isoelectric Point: 6.3391

>NTDB_id=997772 ELZ51_RS09325 WP_126427635.1 1858327..1861152(-) (uvrA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MQDKLIIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCINGHGAITASSVEQIVEQVLALPERTRMQILAPIVRRKK
GQHKTVFEKIQKDGYVRVRVDGDIFDVTEVPELSKSKMHNIEVVIDRLVNKNGIRSRLFDSIEAALRLGDGYVVIDTMDG
SELLFSEHYSCPVCGFTIPELEPRLFSFNAPFGSCPTCDGLGIKLEVDLDLVVPDPSKTLREGALAPWNPISSNYYPTML
EQAMASFGVDMDTPFEALTEEERDLVLYGSGDREFHFHYVNDFGGERNIDIPFEGVVTNVHRRYHETNSDYTRNVMRGYM
NELTCATCHGYRLNDQALCVHVGGEKGPHIGQISELSIADHLQLLEGLELTENESTIAKPIVKEIHDRLTFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLKKMRDLGNTLIVVEHDEDTMMQADWLI
DVGPGAGEFGGEIIASGTPKQVARNKKSITGQYLSGKKFIPVPLERRSGNGRFIEIKGAAQNNLQHLDVRFPLGKFIAVT
GVSGSGKSTLVNSILKKAVAQKLHRNTDKPGKYQSISGIEHIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKGKNIAEVLDMTVDDALVFF
SAIPKIARKIQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTDDIARLLKVLERFVD
DGNTVLVIEHNLDVIKSADHIIDLGPEGGVGGGQIIATGTPEEVAEAKESYTGHYLKVKLL

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=997772 ELZ51_RS09325 WP_126427635.1 1858327..1861152(-) (uvrA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGCAAGATAAATTAATTATTCATGGGGCAAGAGCCCACAATTTAAAAAATATTGACGTGGAAATTCCACGAGACAAATT
AGTTGTCGTGACAGGGTTATCAGGTTCAGGAAAATCTAGTCTAGCCTTTGATACTATTTATGCGGAAGGGCAACGTCGTT
ACGTAGAAAGTTTATCAGCTTACGCTAGGCAATTCTTGGGTAATATGGAAAAACCAGATGTGGATTCCATTGACGGTCTT
AGCCCTGCTATTTCCATTGACCAAAAAACCACCAGTAAGAACCCTCGCTCAACGGTTGGTACGGTTACGGAAATCAATGA
TTATTTACGTCTACTATATGCGCGTGTAGGCACACCTTACTGTATCAATGGGCATGGTGCTATCACGGCGTCTTCTGTGG
AGCAAATTGTTGAACAGGTCTTGGCCCTCCCTGAACGGACACGAATGCAGATTTTAGCTCCTATTGTTCGTCGGAAGAAG
GGGCAACACAAAACAGTTTTTGAGAAAATTCAAAAAGACGGCTATGTCCGTGTGCGCGTTGACGGGGATATTTTTGACGT
GACAGAAGTGCCAGAGTTGTCCAAAAGTAAGATGCATAACATTGAGGTGGTTATTGACCGTCTGGTTAATAAGAATGGCA
TTCGCAGTCGATTATTTGATTCCATTGAAGCAGCTTTAAGGCTGGGAGATGGTTATGTCGTCATTGATACTATGGATGGC
AGTGAATTGCTCTTTTCTGAGCACTATTCTTGTCCTGTCTGTGGGTTTACGATTCCTGAATTGGAGCCAAGACTCTTCTC
CTTTAATGCGCCGTTCGGCTCTTGTCCAACCTGTGATGGGCTGGGCATTAAACTGGAAGTGGATTTGGATTTGGTTGTTC
CTGACCCAAGTAAGACGTTGAGAGAAGGAGCTTTGGCGCCTTGGAATCCTATTTCCTCCAATTATTACCCAACCATGCTT
GAGCAAGCTATGGCGAGTTTTGGGGTGGATATGGATACACCTTTTGAGGCCTTGACTGAGGAAGAAAGAGATTTAGTTCT
TTATGGTTCAGGGGACCGAGAATTTCATTTTCACTATGTGAATGATTTTGGTGGTGAGCGGAACATTGATATTCCTTTTG
AAGGGGTTGTGACCAATGTTCATCGCCGTTATCACGAAACTAATAGTGATTATACGCGCAATGTGATGCGTGGTTATATG
AACGAATTGACCTGTGCGACTTGTCATGGTTACCGTTTGAATGACCAAGCTTTGTGTGTGCATGTGGGTGGCGAAAAAGG
ACCTCATATTGGTCAAATTTCAGAATTATCTATTGCCGACCACTTGCAGTTGTTGGAAGGATTGGAACTCACAGAAAATG
AAAGTACCATTGCTAAACCGATTGTCAAAGAAATCCATGACCGTCTGACATTCTTAAATAATGTGGGACTGAATTATCTG
ACCTTGTCACGAGCTGCTGGGACTTTATCAGGTGGTGAAAGTCAACGAATCAGGTTGGCAACACAAATTGGTTCTAACCT
ATCAGGGGTGCTCTATATTTTGGATGAGCCTTCTATTGGATTGCATCAAAGAGACAATGACCGTTTGATTGAAAGTCTGA
AAAAGATGCGTGATTTGGGTAATACCTTAATTGTGGTCGAACACGATGAAGACACCATGATGCAAGCGGATTGGCTGATT
GATGTGGGGCCAGGGGCAGGTGAGTTCGGTGGAGAAATTATTGCCTCTGGAACGCCGAAACAAGTGGCTAGGAATAAAAA
ATCCATCACAGGTCAATATTTGTCTGGTAAAAAATTCATTCCAGTGCCTTTAGAGCGCCGTTCTGGTAATGGCCGATTCA
TTGAAATAAAAGGAGCGGCACAGAACAATCTTCAACACCTTGATGTTAGATTCCCTCTCGGCAAATTTATTGCTGTTACA
GGGGTATCGGGTTCTGGTAAGTCTACCTTGGTTAATAGTATTTTGAAAAAGGCTGTCGCTCAGAAACTTCATCGCAATAC
CGACAAGCCTGGGAAGTATCAGTCTATTTCTGGTATTGAACATATTGAACGGTTGATTGACATCGATCAAAGTCCGATTG
GGAGGACGCCACGCTCAAATCCAGCAACTTATACTGGGGTCTTTGATGATATTCGAGACTTGTTTGCTCAAACCAATGAA
GCTAAGATTCGTGGCTACAAAAAAGGACGTTTCTCTTTTAATGTCAAGGGTGGGCGTTGTGAAGCTTGTTCAGGTGATGG
GATTATCAAGATTGAAATGCACTTTTTGCCAGATGTTTATGTGCCATGTGAGGTTTGTCACGGCAGGCGGTATAATTCTG
AAACACTTGAAGTGCATTACAAAGGAAAAAATATCGCAGAAGTCCTTGATATGACTGTGGATGATGCCTTGGTATTCTTC
TCTGCTATTCCTAAAATTGCTCGAAAAATTCAAACGATTAAGGATGTTGGACTTGGTTATGTGACCTTAGGTCAACCAGC
TACCACTCTCTCTGGGGGAGAAGCACAGCGGATGAAGTTGGCTAGTGAATTGCACAAGCGGTCGACAGGAAAGAGTCTGT
ATATCTTGGACGAACCAACGACTGGCTTGCATACAGATGATATCGCAAGGCTTTTGAAGGTATTAGAACGCTTTGTAGAC
GATGGCAATACGGTTCTTGTGATTGAGCATAACTTGGATGTTATTAAGTCTGCCGACCATATCATTGACTTAGGGCCAGA
AGGCGGTGTTGGTGGAGGTCAGATTATTGCGACGGGGACACCAGAAGAGGTTGCTGAAGCCAAAGAAAGTTATACTGGTC
ATTATTTGAAAGTCAAATTATTATAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(132-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

85.638

99.894

0.855
  uvrA Streptococcus pneumoniae TIGR4

85.638

99.894

0.855
  uvrA Streptococcus pneumoniae D39

85.638

99.894

0.855

Multiple sequence alignment