Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   KZZ19_RS21475 Genome accession   NZ_CP155559
Coordinates   4141798..4144134 (-) Length   778 a.a.
NCBI ID   WP_237979554.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HSY204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4136798..4149134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS21450 (KZZ19_021445) - 4139460..4139804 (+) 345 WP_088059728.1 PH domain-containing protein -
  KZZ19_RS21455 (KZZ19_021450) - 4139843..4140910 (-) 1068 WP_088097839.1 AI-2E family transporter -
  KZZ19_RS21460 (KZZ19_021455) - 4141087..4141299 (+) 213 WP_000242555.1 hypothetical protein -
  KZZ19_RS21465 (KZZ19_021460) - 4141335..4141463 (-) 129 WP_001053553.1 YrzQ family protein -
  KZZ19_RS21470 (KZZ19_021465) - 4141482..4141670 (-) 189 WP_000469281.1 hypothetical protein -
  KZZ19_RS21475 (KZZ19_021470) recD2 4141798..4144134 (-) 2337 WP_237979554.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KZZ19_RS21480 (KZZ19_021475) - 4144242..4144901 (-) 660 WP_237979555.1 tetratricopeptide repeat protein -
  KZZ19_RS21485 (KZZ19_021480) mnmA 4145012..4146127 (-) 1116 WP_088097843.1 tRNA 2-thiouridine(34) synthase MnmA -
  KZZ19_RS21490 (KZZ19_021485) - 4146144..4147289 (-) 1146 WP_237979556.1 cysteine desulfurase family protein -
  KZZ19_RS21495 (KZZ19_021490) - 4147325..4147741 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87294.93 Da        Isoelectric Point: 5.2670

>NTDB_id=997764 KZZ19_RS21475 WP_237979554.1 4141798..4144134(-) (recD2) [Bacillus thuringiensis strain HSY204]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNTNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSAKDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SIFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFRSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=997764 KZZ19_RS21475 WP_237979554.1 4141798..4144134(-) (recD2) [Bacillus thuringiensis strain HSY204]
ATGGGAAATCAACATGCCATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAATCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACGGCCGAAAAAATTGTGGACCATCTCGGGGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCATTAAATGGTGTTGTCAACAAACAAAAAGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAACAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCGTACCAACTTATCGAAGAAGTGGATGGGATTGGCTTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGTATATCGGGTAATCATGATGACCGTGTACGTGCGGGGTGTTTTTATACGTTAGAGAATGTTTCA
CTGCAACTCGGTCACGTTTATATGGGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTGTAGGTTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTAGCTTCGTTATTCTACTCTGAAAAAGGCGTTGTAAAGTCAATTCGTCGTCTTATGAACCAAGAAGAAACCCCTGCA
TTCCCTGAAGCAGAAGTGTTAAAAACGTTAGGGGAAATTGAAGAACAGCTAAAGGTACAGTATGCACCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGCTATTAACGGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGCGTCACTGCACGGATTATCATTAAATACGAATGAATACAGTGATGATAATCCATTTCCAATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGTATGAGTGAATCGACAGGGCTTCCAGCTTGTACGATTCATCGTTT
GCTTGGTTGGACGCCAGAAGGGTCTTTCCAGCGCAATGAAACCGATCCAGTACAAGGAAAGCTACTCATTATTGATGAGT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTCAAGTCACTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGTTAAAAGATTTATTAAATGCAGGAGCCATCCCAACGGTAAAACT
TACAGAAATTTATCGTCAGGCAGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGAACACTTCCACCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGGGCTCAAATTGTTGAAGTTGTAAAAAAAGTATGT
GAAAACGCGAAGACGAAAGGGTTTAGCGCAAAAGATGTACAAGTGTTGGCACCTATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAAAGTAAAGAAATTGCCTACGGTGACGTTGTGT
ATCGAAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTGTTTAATGGTGATATTGGAGAAATCGTT
TCGATTTTTTATGCAAAAGAAAATGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGGATTGAAGTAACGTATAC
AAAGCCTGATTTGAACCAAATTACCCATGCATATTGCTGCTCAATTCATAAATCACAAGGTAGTGAATTCCCAATAGTTA
TTATGCCAATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGGAGTAAGAAATTC
CTTATTATTTGTGGTGAGGAAGCAGCTTTCCGGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACTTTAGC
GGGTCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.581

Multiple sequence alignment