Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KZZ19_RS21005 Genome accession   NZ_CP155559
Coordinates   4057125..4057871 (-) Length   248 a.a.
NCBI ID   WP_000487012.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HSY204     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4052125..4062871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS20990 (KZZ19_020985) dnaG 4052894..4054690 (-) 1797 WP_237979515.1 DNA primase -
  KZZ19_RS20995 (KZZ19_020990) - 4055543..4056355 (-) 813 WP_000368940.1 pyruvate, water dikinase regulatory protein -
  KZZ19_RS21000 (KZZ19_020995) - 4056385..4057017 (-) 633 WP_000583755.1 helix-turn-helix transcriptional regulator -
  KZZ19_RS21005 (KZZ19_021000) recO 4057125..4057871 (-) 747 WP_000487012.1 DNA repair protein RecO Machinery gene
  KZZ19_RS21010 (KZZ19_021005) - 4057905..4058048 (-) 144 WP_000883924.1 YqzL family protein -
  KZZ19_RS21015 (KZZ19_021010) era 4058225..4059130 (-) 906 WP_061677310.1 GTPase Era -
  KZZ19_RS21020 (KZZ19_021015) - 4059123..4059521 (-) 399 WP_001086294.1 cytidine deaminase -
  KZZ19_RS21025 (KZZ19_021020) - 4059621..4059974 (-) 354 WP_000715483.1 diacylglycerol kinase family protein -
  KZZ19_RS21030 (KZZ19_021025) ybeY 4059971..4060441 (-) 471 WP_000054689.1 rRNA maturation RNase YbeY -
  KZZ19_RS21035 (KZZ19_021030) - 4060438..4062582 (-) 2145 WP_237979516.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28632.15 Da        Isoelectric Point: 8.0462

>NTDB_id=997762 KZZ19_RS21005 WP_000487012.1 4057125..4057871(-) (recO) [Bacillus thuringiensis strain HSY204]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGNFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=997762 KZZ19_RS21005 WP_000487012.1 4057125..4057871(-) (recO) [Bacillus thuringiensis strain HSY204]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCCAGAGGGGCGAAAAAGCCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CCCATGGTAATTTTCTTATTCAAATGGGATCTGGGCTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATTCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCAGTATTAGGGATGCGCCCGTATTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCTGAGCAAGACCAGTATCGTATACCAGTGGG
GGAAGCTGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548

Multiple sequence alignment