Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ELZ51_RS08465 Genome accession   NZ_LR134094
Coordinates   1679458..1680099 (-) Length   213 a.a.
NCBI ID   WP_003052152.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1674458..1685099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS08445 (NCTC4669_01789) - 1675834..1676472 (+) 639 WP_003052144.1 YigZ family protein -
  ELZ51_RS08450 (NCTC4669_01790) cysK 1676576..1677511 (+) 936 WP_126427051.1 cysteine synthase A -
  ELZ51_RS08455 (NCTC4669_01791) - 1677662..1678021 (-) 360 WP_003052148.1 S1 RNA-binding domain-containing protein -
  ELZ51_RS08460 (NCTC4669_01792) - 1678021..1679421 (-) 1401 WP_126427053.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ELZ51_RS08465 (NCTC4669_01793) vraR 1679458..1680099 (-) 642 WP_003052152.1 response regulator transcription factor Regulator
  ELZ51_RS08470 (NCTC4669_01794) - 1680092..1681096 (-) 1005 WP_003052154.1 sensor histidine kinase -
  ELZ51_RS08475 (NCTC4669_01795) liaF 1681093..1681785 (-) 693 WP_115246321.1 cell wall-active antibiotics response protein LiaF -
  ELZ51_RS08480 (NCTC4669_01796) pknB 1681913..1683808 (-) 1896 WP_115246322.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  ELZ51_RS08485 (NCTC4669_01797) - 1683805..1684545 (-) 741 WP_115246323.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23872.53 Da        Isoelectric Point: 4.8864

>NTDB_id=997762 ELZ51_RS08465 WP_003052152.1 1679458..1680099(-) (vraR) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MNNIRVILVDDHEMVRMGLKSFLNLQPDIDVIGEASNGREGVELALALKPDVLVMDLVMPELGGVEATLKILDKWKDAKI
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILYLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=997762 ELZ51_RS08465 WP_003052152.1 1679458..1680099(-) (vraR) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGAATAATATAAGAGTGATACTAGTGGATGATCACGAAATGGTCCGTATGGGACTTAAAAGTTTTTTGAATTTACAACC
AGATATCGACGTTATTGGCGAAGCTTCTAATGGACGTGAGGGAGTTGAGTTGGCCTTAGCCTTAAAACCAGATGTGCTGG
TTATGGATTTGGTGATGCCAGAACTAGGTGGTGTTGAGGCGACCTTGAAAATCCTCGATAAGTGGAAAGATGCCAAAATA
TTGGTCTTGACCTCTTATTTAGATAATGAGAAAATTTACCCTGTCATTGATGCTGGTGCTAAAGGTTACATGTTAAAGAC
TTCTAGTGCAGCCGAAATTTTAAATGCTATTCGGAAAGTTTCAAAAGGTGAATTGGCCATTGAAACAGAGGTAGACAAAA
AAATTAAAGCGCATGATCAACACCCTGATTTGCATGAAGAACTAACCGCGCGCGAGTATGATATTTTATATCTTTTAGCT
AAAGGGTATGATAATCAAACTATAGCGGATGAACTTTTCATCTCCTTGAAAACCGTTAAAACGCATGTATCTAATATTCT
TGCTAAGCTAGAAGTTGATGACCGAACTCAAGCTGTTGTATACGCTTTCCGACACCATTTAGTCCCCCAAGATGATAATT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.208

97.183

0.498
  degU Bacillus subtilis subsp. subtilis str. 168

34.956

100

0.371

Multiple sequence alignment