Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KZZ19_RS07770 Genome accession   NZ_CP155559
Coordinates   1494601..1495203 (-) Length   200 a.a.
NCBI ID   WP_237981881.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HSY204     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1489601..1500203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS07750 (KZZ19_007750) dnaD 1489928..1490635 (+) 708 WP_088095800.1 DNA replication protein DnaD -
  KZZ19_RS07755 (KZZ19_007755) nth 1490651..1491298 (+) 648 WP_088095801.1 endonuclease III -
  KZZ19_RS07760 (KZZ19_007760) - 1491302..1491820 (+) 519 WP_088095802.1 YpoC family protein -
  KZZ19_RS07765 (KZZ19_007765) - 1491844..1494534 (-) 2691 WP_237981880.1 PBP1A family penicillin-binding protein -
  KZZ19_RS07770 (KZZ19_007770) recU 1494601..1495203 (-) 603 WP_237981881.1 Holliday junction resolvase RecU Machinery gene
  KZZ19_RS07775 (KZZ19_007775) - 1495307..1496332 (+) 1026 WP_237981882.1 DUF2515 domain-containing protein -
  KZZ19_RS07780 (KZZ19_007780) - 1496490..1496666 (-) 177 WP_172555552.1 phage portal protein -
  KZZ19_RS07785 (KZZ19_007785) - 1496752..1496994 (+) 243 WP_001252039.1 hypothetical protein -
  KZZ19_RS07790 (KZZ19_007790) - 1497010..1497354 (+) 345 WP_088095806.1 YppE family protein -
  KZZ19_RS07795 (KZZ19_007795) - 1497381..1497572 (-) 192 WP_000242661.1 YppF family protein -
  KZZ19_RS07800 (KZZ19_007800) - 1497750..1498301 (+) 552 WP_088095807.1 YppG family protein -
  KZZ19_RS07805 (KZZ19_007805) - 1498458..1498889 (+) 432 WP_237981883.1 CotD family spore coat protein -
  KZZ19_RS07810 (KZZ19_007810) - 1498946..1499500 (+) 555 WP_076536397.1 DUF1273 domain-containing protein -
  KZZ19_RS07815 (KZZ19_007815) gpsB 1499598..1499936 (+) 339 WP_000622425.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.66 Da        Isoelectric Point: 9.5537

>NTDB_id=997745 KZZ19_RS07770 WP_237981881.1 1494601..1495203(-) (recU) [Bacillus thuringiensis strain HSY204]
MTIRYPNGKRYNQASKPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=997745 KZZ19_RS07770 WP_237981881.1 1494601..1495203(-) (recU) [Bacillus thuringiensis strain HSY204]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCAAAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACCTAACCCATAATATTGCATGTGTAC
ATAAAAAACCGACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAGACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGGAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment