Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KZZ19_RS06440 Genome accession   NZ_CP155559
Coordinates   1251231..1251554 (-) Length   107 a.a.
NCBI ID   WP_000578867.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HSY204     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1246231..1256554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS06415 (KZZ19_006415) - 1246439..1247725 (+) 1287 WP_237979906.1 D-alanyl-D-alanine carboxypeptidase family protein -
  KZZ19_RS06420 (KZZ19_006420) - 1247920..1248489 (+) 570 WP_237979908.1 signal peptidase I -
  KZZ19_RS06425 (KZZ19_006425) - 1248551..1249138 (+) 588 WP_237979909.1 CalY family protein -
  KZZ19_RS06430 (KZZ19_006430) - 1249301..1250131 (+) 831 WP_348638030.1 DUF4047 domain-containing protein -
  KZZ19_RS06435 (KZZ19_006435) calY 1250557..1251150 (+) 594 WP_237979911.1 biofilm matrix protein CalY -
  KZZ19_RS06440 (KZZ19_006440) sinR 1251231..1251554 (-) 324 WP_000578867.1 helix-turn-helix domain-containing protein Regulator
  KZZ19_RS06445 (KZZ19_006445) - 1251634..1251768 (-) 135 WP_088095618.1 anti-repressor SinI family protein -
  KZZ19_RS06450 (KZZ19_006450) inhA1 1252111..1254498 (+) 2388 WP_001035922.1 M6 family metalloprotease immune inhibitor InhA1 -
  KZZ19_RS06455 (KZZ19_006455) - 1254669..1256036 (+) 1368 WP_237979912.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12338.17 Da        Isoelectric Point: 8.5805

>NTDB_id=997743 KZZ19_RS06440 WP_000578867.1 1251231..1251554(-) (sinR) [Bacillus thuringiensis strain HSY204]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETAKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKHDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=997743 KZZ19_RS06440 WP_000578867.1 1251231..1251554(-) (sinR) [Bacillus thuringiensis strain HSY204]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTAGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAGCAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAGTTTACAAAATGGAAGCACGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment