Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ELZ51_RS04765 Genome accession   NZ_LR134094
Coordinates   916055..918163 (-) Length   702 a.a.
NCBI ID   WP_126426400.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 911055..923163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS04735 (NCTC4669_00998) - 911551..912390 (+) 840 WP_003050334.1 thymidylate synthase -
  ELZ51_RS04740 (NCTC4669_00999) - 912471..912968 (+) 498 WP_003050336.1 dihydrofolate reductase -
  ELZ51_RS04745 (NCTC4669_01000) - 912988..913158 (+) 171 WP_003050338.1 hypothetical protein -
  ELZ51_RS04750 (NCTC4669_01001) clpX 913274..914503 (+) 1230 WP_126426396.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ELZ51_RS04755 (NCTC4669_01002) yihA 914513..915112 (+) 600 WP_115252820.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ELZ51_RS04760 (NCTC4669_01003) - 915255..915998 (+) 744 WP_126426398.1 hypothetical protein -
  ELZ51_RS04765 (NCTC4669_01004) clpC 916055..918163 (-) 2109 WP_126426400.1 AAA family ATPase Regulator
  ELZ51_RS04770 (NCTC4669_01005) - 918324..919347 (-) 1024 Protein_901 IS30 family transposase -
  ELZ51_RS04775 (NCTC4669_01007) rplJ 919690..920190 (+) 501 WP_003050354.1 50S ribosomal protein L10 -
  ELZ51_RS04780 rplL 920255..920620 (+) 366 WP_003043797.1 50S ribosomal protein L7/L12 -
  ELZ51_RS11540 - 920928..921053 (+) 126 WP_269461378.1 hypothetical protein -
  ELZ51_RS04790 (NCTC4669_01009) - 921050..921874 (+) 825 WP_093998674.1 replication initiator protein A -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77718.40 Da        Isoelectric Point: 4.8963

>NTDB_id=997735 ELZ51_RS04765 WP_126426400.1 916055..918163(-) (clpC) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MTNYYDKDPFGNMDDIFNQLMGNMGGYRSENRRYLVNGREMTPEEFQAYRQTGRLSDKGDKGTEQSTSQGHQTKKDGILA
KLGTNLTEEARQGKLDPVIGRNHEIQDTAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDI
SGLEAGTQYRGSFEENIQNMIQEVKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADMLKPALSRGELTLIGATTQDEYR
NTILKNAALARRFNEVKVNAPSAEDTFHILMGIRDLYEQHHNVILPDAVLKAAIDYSIQYIPQRSLPDKAIDLVDMTAAH
LASQHPVTDLKSLEAEMTTQKNIQEEAVAKEDFERALTAKTRIEELQKQMDSHSEDQKVTATVNDIAKSVERLTGVPVSN
MGASDLERLKEISNRLKGHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKDAII
RLDMSEYSDRTAVSKLIGTTAGYIGYDDNNNTLTERVRRNPYAIVLLDEIEKADPQVITLLLQVLDDGRLTDSQGNTINF
KNTVIIATSNAGFGHQEDENTDQPAIMDRIAPYFRPEFLNRFNGVIEFNHLQKEDLEEIVDLMLAEVNQTIAKKGISLTI
SDDAKAHLIELGYDHAMGVRPLRRVIEQEIRDRITDFYLDHPEVKNLQASLEQGQLVIHDKN

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=997735 ELZ51_RS04765 WP_126426400.1 916055..918163(-) (clpC) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGACAAATTATTATGACAAAGATCCTTTTGGAAACATGGATGATATCTTTAATCAACTAATGGGCAATATGGGTGGCTA
TCGTAGTGAAAATCGACGCTATTTAGTGAACGGACGCGAAATGACACCTGAAGAATTCCAGGCATATCGTCAAACTGGTC
GTCTAAGCGATAAAGGTGATAAAGGTACTGAACAATCTACATCCCAAGGTCATCAGACCAAAAAGGATGGGATTTTAGCT
AAACTGGGCACCAACTTAACTGAAGAAGCAAGACAAGGAAAACTTGATCCTGTTATTGGTCGCAATCACGAAATTCAAGA
CACTGCGGAAATTTTAGCTCGCCGAACAAAGAATAATCCCGTTCTAGTCGGAGATGCTGGTGTTGGTAAAACAGCTGTGG
TTGAAGGACTAGCTCAAGCTATTGTGAATGGTGACGTCCCTGCTGCTATCAAAAATAAAGAAATTATTTCCATTGATATC
TCTGGCCTTGAAGCAGGCACTCAGTACCGTGGCTCCTTTGAAGAAAATATCCAAAACATGATTCAAGAGGTCAAAGAAGC
TGGGAATATTATTCTCTTCTTTGACGAAATCCATCAAATCCTTGGTGCAGGTTCCACTGGTGGTGACTCTGGGTCTAAAG
GATTAGCTGATATGCTAAAACCCGCTCTTTCCCGTGGTGAATTGACACTGATTGGTGCAACAACTCAAGATGAATACCGC
AATACCATTTTAAAAAATGCTGCGCTTGCTCGTCGTTTTAATGAGGTTAAGGTAAATGCACCGTCTGCTGAAGACACCTT
CCATATTTTAATGGGAATTCGAGATCTTTACGAACAACACCATAATGTTATCCTTCCGGATGCTGTTCTTAAAGCTGCGA
TTGACTATTCTATTCAGTACATTCCTCAACGTAGTTTACCAGATAAAGCAATTGACTTAGTAGATATGACTGCTGCGCAT
CTAGCCTCTCAGCATCCTGTGACTGACCTCAAGTCTCTAGAAGCTGAAATGACAACTCAAAAGAACATCCAAGAAGAGGC
TGTGGCCAAGGAAGATTTTGAGAGAGCTTTAACCGCTAAAACACGAATTGAAGAATTGCAAAAACAAATGGACAGCCATA
GCGAAGACCAAAAGGTTACTGCTACTGTCAATGACATTGCAAAATCCGTAGAGCGCCTGACTGGTGTCCCAGTGTCCAAT
ATGGGAGCTAGTGATTTGGAAAGACTCAAAGAAATTAGTAACCGCTTAAAAGGACACGTGATTGGCCAAGATGGAGCTGT
TGAAGCTGTGGCTCGTGCTATTCGCCGTAATCGAGCTGGTTTTGACGACGGCAATCGTCCTATCGGTTCCTTCCTCTTTG
TTGGACCAACAGGTGTCGGTAAAACAGAATTAGCCAAACAGCTAGCACTGGACCTCTTTGGTTCCAAAGATGCTATTATT
CGACTTGACATGTCTGAATATAGTGATCGTACAGCTGTGTCCAAGCTAATCGGCACAACTGCTGGTTATATCGGCTATGA
TGATAATAACAATACGCTAACGGAACGCGTTCGTCGCAATCCATATGCGATTGTTCTATTGGATGAGATTGAAAAAGCCG
ATCCGCAAGTCATTACTCTTCTTCTCCAAGTACTGGATGATGGCCGATTAACAGATAGTCAGGGGAATACCATCAACTTT
AAAAACACTGTTATCATTGCTACTTCTAATGCGGGATTTGGGCATCAAGAAGATGAAAACACAGATCAACCTGCTATTAT
GGATCGTATTGCGCCTTACTTTAGACCAGAATTTCTCAATCGTTTCAATGGGGTTATCGAATTCAATCATTTGCAAAAAG
AAGACTTAGAAGAAATTGTTGATTTAATGTTAGCAGAAGTTAATCAAACCATAGCTAAAAAAGGAATTAGCTTAACTATT
TCTGATGATGCCAAAGCTCACTTGATTGAACTAGGTTATGACCACGCAATGGGAGTTCGACCATTACGCCGTGTCATCGA
GCAAGAAATCCGAGACCGCATTACAGACTTCTACCTCGATCACCCAGAGGTCAAAAACCTACAAGCTAGTCTGGAACAAG
GACAGTTAGTCATTCACGACAAAAATTGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(446-603)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-682)

ATPase family associated with various cellular activities (AAA) (AAA)

(121-253)

AAA lid domain (AAA_lid_9)

(262-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

47.051

100

0.477
  clpE Streptococcus mutans UA159

46.348

100

0.47
  clpE Streptococcus pneumoniae TIGR4

45.857

99.715

0.457
  clpE Streptococcus pneumoniae Rx1

45.857

99.715

0.457
  clpE Streptococcus pneumoniae D39

45.857

99.715

0.457
  clpE Streptococcus pneumoniae R6

45.857

99.715

0.457
  clpC Bacillus subtilis subsp. subtilis str. 168

44.341

91.88

0.407
  clpC Streptococcus pneumoniae D39

40.822

97.009

0.396
  clpC Streptococcus pneumoniae Rx1

40.822

97.009

0.396
  clpC Streptococcus pneumoniae TIGR4

40.675

97.009

0.395
  clpC Streptococcus thermophilus LMD-9

43.156

88.462

0.382
  clpC Streptococcus thermophilus LMG 18311

43.156

88.462

0.382
  clpC Streptococcus mutans UA159

42.903

88.319

0.379
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

42.165

88.177

0.372

Multiple sequence alignment