Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KZZ19_RS00220 Genome accession   NZ_CP155559
Coordinates   40529..40813 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain HSY204     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35529..45813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS00185 (KZZ19_000185) tmk 35680..36306 (+) 627 WP_098344100.1 dTMP kinase -
  KZZ19_RS00190 (KZZ19_000190) holB 36342..37325 (+) 984 WP_237982471.1 DNA polymerase III subunit delta' -
  KZZ19_RS00195 (KZZ19_000195) - 37331..38158 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  KZZ19_RS00200 (KZZ19_000200) yabA 38173..38526 (+) 354 WP_000412057.1 DNA replication initiation control protein YabA -
  KZZ19_RS00205 (KZZ19_000205) - 38647..39387 (+) 741 WP_088094778.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KZZ19_RS00210 (KZZ19_000210) - 39374..39664 (+) 291 WP_029439096.1 GIY-YIG nuclease family protein -
  KZZ19_RS00215 (KZZ19_000215) rsmI 39633..40508 (+) 876 WP_237982470.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KZZ19_RS00220 (KZZ19_000220) abrB 40529..40813 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KZZ19_RS00225 (KZZ19_000225) metG 41331..43313 (+) 1983 WP_237982469.1 methionine--tRNA ligase -
  KZZ19_RS00230 (KZZ19_000230) - 43478..44245 (+) 768 WP_088094781.1 TatD family hydrolase -
  KZZ19_RS00235 (KZZ19_000235) rnmV 44461..45018 (+) 558 WP_048562636.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=997728 KZZ19_RS00220 WP_000843036.1 40529..40813(-) (abrB) [Bacillus thuringiensis strain HSY204]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=997728 KZZ19_RS00220 WP_000843036.1 40529..40813(-) (abrB) [Bacillus thuringiensis strain HSY204]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment