Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   ABER85_RS12450 Genome accession   NZ_CP155547
Coordinates   2574979..2576133 (-) Length   384 a.a.
NCBI ID   WP_000755286.1    Uniprot ID   -
Organism   Acinetobacter sp. 8_A20231192     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2569979..2581133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABER85_RS12430 (ABER85_12430) - 2571140..2571790 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  ABER85_RS12435 (ABER85_12435) - 2571896..2572816 (+) 921 WP_000084546.1 DMT family transporter -
  ABER85_RS12440 (ABER85_12440) - 2573208..2573777 (-) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  ABER85_RS12445 (ABER85_12445) dprA 2573828..2574958 (-) 1131 WP_114155560.1 DNA-processing protein DprA Machinery gene
  ABER85_RS12450 (ABER85_12450) tsaP 2574979..2576133 (-) 1155 WP_000755286.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABER85_RS12455 (ABER85_12455) def 2576256..2576786 (+) 531 WP_001196539.1 peptide deformylase -
  ABER85_RS12460 (ABER85_12460) - 2576823..2577251 (+) 429 WP_000231977.1 DUF2946 family protein -
  ABER85_RS12465 (ABER85_12465) - 2577324..2579399 (+) 2076 WP_346534678.1 TonB-dependent copper receptor -
  ABER85_RS12470 (ABER85_12470) - 2579453..2579659 (+) 207 WP_000182542.1 hypothetical protein -
  ABER85_RS12475 (ABER85_12475) - 2579729..2580943 (-) 1215 WP_346534681.1 oxygenase MpaB family protein -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42378.33 Da        Isoelectric Point: 8.8713

>NTDB_id=997661 ABER85_RS12450 WP_000755286.1 2574979..2576133(-) (tsaP) [Acinetobacter sp. 8_A20231192]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNRHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=997661 ABER85_RS12450 WP_000755286.1 2574979..2576133(-) (tsaP) [Acinetobacter sp. 8_A20231192]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCGACATGTTAAAAATCCGCACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGTGACGGCTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAACC
TGCAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGGGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCATTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGTAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992


Multiple sequence alignment