Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ELZ56_RS03940 Genome accession   NZ_LR134093
Coordinates   799144..800226 (+) Length   360 a.a.
NCBI ID   WP_000370984.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC11965     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 794144..805226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ56_RS03920 (NCTC11965_00744) gdpS 794522..795592 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  ELZ56_RS03925 (NCTC11965_00745) - 795910..796965 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  ELZ56_RS03930 (NCTC11965_00746) - 797129..797770 (-) 642 WP_000192947.1 YigZ family protein -
  ELZ56_RS03935 (NCTC11965_00747) fakB1 797914..798780 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  ELZ56_RS03940 (NCTC11965_00748) comFA 799144..800226 (+) 1083 WP_000370984.1 DEAD/DEAH box helicase Machinery gene
  ELZ56_RS03945 (NCTC11965_00749) - 800219..800893 (+) 675 WP_001057973.1 ComF family protein -
  ELZ56_RS03950 (NCTC11965_00750) hpf 800954..801526 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ELZ56_RS03955 (NCTC11965_00751) secA 801940..804471 (+) 2532 WP_000506536.1 preprotein translocase subunit SecA -
  ELZ56_RS03960 - 804513..804611 (+) 99 WP_001791369.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42016.52 Da        Isoelectric Point: 9.6568

>NTDB_id=997617 ELZ56_RS03940 WP_000370984.1 799144..800226(+) (comFA) [Staphylococcus aureus strain NCTC11965]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPLENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSIYKQKITKLTYVHSEDVFRFEKVEQLRNGQYDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=997617 ELZ56_RS03940 WP_000370984.1 799144..800226(+) (comFA) [Staphylococcus aureus strain NCTC11965]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
ATCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGACGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCTCGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAACAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGATTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATACGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369