Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EL041_RS25215 Genome accession   NZ_LR134092
Coordinates   5237509..5238501 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain NCTC10444     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5232509..5243501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL041_RS25205 (NCTC10444_05002) yieP 5235401..5236093 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  EL041_RS25210 (NCTC10444_05003) mdtD 5236116..5237543 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  EL041_RS25215 (NCTC10444_05004) cytR 5237509..5238501 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  EL041_RS25220 (NCTC10444_05005) rbsK 5238505..5239434 (-) 930 WP_024234399.1 ribokinase -
  EL041_RS25225 (NCTC10444_05006) rbsB 5239560..5240450 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  EL041_RS25230 (NCTC10444_05007) rbsC 5240475..5241440 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  EL041_RS25235 (NCTC10444_05008) rbsA 5241445..5242950 (-) 1506 WP_000387778.1 ribose ABC transporter ATP-binding protein RbsA -
  EL041_RS25240 (NCTC10444_05009) rbsD 5242958..5243377 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=997599 EL041_RS25215 WP_000224470.1 5237509..5238501(-) (cytR) [Escherichia coli strain NCTC10444]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=997599 EL041_RS25215 WP_000224470.1 5237509..5238501(-) (cytR) [Escherichia coli strain NCTC10444]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACTAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATAA
TGCAACGTTATCCGACAGTACCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCTCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment