Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABC806_RS08585 Genome accession   NZ_CP155539
Coordinates   1652958..1653689 (-) Length   243 a.a.
NCBI ID   WP_000889924.1    Uniprot ID   A0A0H2UNS3
Organism   Streptococcus pneumoniae TIGR4     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647958..1658689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS08555 (ABC806_08545) blpC 1648506..1648634 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  ABC806_RS08560 (ABC806_08550) - 1648705..1650045 (-) 1341 WP_001017646.1 sensor histidine kinase -
  ABC806_RS08565 (ABC806_08555) comE/blpR 1650059..1650796 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  ABC806_RS08570 (ABC806_08560) - 1650801..1651139 (-) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  ABC806_RS08575 (ABC806_08565) - 1651415..1651744 (+) 330 WP_000132572.1 hypothetical protein -
  ABC806_RS08580 (ABC806_08570) - 1651912..1652961 (-) 1050 WP_000653779.1 ABC transporter permease -
  ABC806_RS08585 (ABC806_08575) pptA 1652958..1653689 (-) 732 WP_000889924.1 ABC transporter ATP-binding protein Regulator
  ABC806_RS08590 (ABC806_08580) - 1653757..1654167 (+) 411 WP_001278301.1 HIT family protein -
  ABC806_RS08595 (ABC806_08585) - 1654177..1654464 (+) 288 WP_000777760.1 hypothetical protein -
  ABC806_RS08600 (ABC806_08590) dnaJ 1655154..1656290 (-) 1137 WP_001066295.1 molecular chaperone DnaJ -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27042.52 Da        Isoelectric Point: 4.7792

>NTDB_id=997599 ABC806_RS08585 WP_000889924.1 1652958..1653689(-) (pptA) [Streptococcus pneumoniae TIGR4]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRSKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=997599 ABC806_RS08585 WP_000889924.1 1652958..1653689(-) (pptA) [Streptococcus pneumoniae TIGR4]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTTCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704

Multiple sequence alignment