Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CJ8421_RS03105 Genome accession   NZ_CP005388
Coordinates   586249..586632 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni subsp. jejuni CG8421     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 581249..591632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ8421_RS03085 (CJ8421_03085) - 581328..583262 (-) 1935 WP_032592180.1 ribonuclease R family protein -
  CJ8421_RS03090 (CJ8421_03090) ilvC 583381..584403 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  CJ8421_RS03095 (CJ8421_03095) - 584407..585489 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  CJ8421_RS03100 (CJ8421_03100) dprA 585479..586252 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  CJ8421_RS03105 (CJ8421_03105) dprB 586249..586632 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  CJ8421_RS03110 (CJ8421_03110) - 586661..587500 (+) 840 WP_002859985.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJ8421_RS03115 (CJ8421_03115) msrA 587675..588172 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJ8421_RS03120 (CJ8421_03120) ppa 588214..588732 (-) 519 WP_002852138.1 inorganic diphosphatase -
  CJ8421_RS03125 (CJ8421_03125) adk 588742..589320 (-) 579 WP_002859580.1 adenylate kinase -
  CJ8421_RS03130 (CJ8421_03130) aspS 589317..591068 (-) 1752 WP_032592178.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=99750 CJ8421_RS03105 WP_002852281.1 586249..586632(+) (dprB) [Campylobacter jejuni subsp. jejuni CG8421]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=99750 CJ8421_RS03105 WP_002852281.1 586249..586632(+) (dprB) [Campylobacter jejuni subsp. jejuni CG8421]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TTATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449