Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ABC804_RS05300 Genome accession   NZ_CP155536
Coordinates   976880..977689 (+) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain M264-3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 971880..982689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC804_RS05285 (ABC804_05285) mutY 973602..974777 (+) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  ABC804_RS05290 (ABC804_05290) micA 974832..975536 (+) 705 WP_000722076.1 response regulator YycF Regulator
  ABC804_RS05295 (ABC804_05295) micB 975529..976878 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ABC804_RS05300 (ABC804_05300) vicX 976880..977689 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  ABC804_RS05305 (ABC804_05305) relB 977780..978022 (+) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  ABC804_RS05310 (ABC804_05310) - 978024..978278 (+) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ABC804_RS05315 (ABC804_05315) - 978325..979068 (+) 744 Protein_995 ion channel -
  ABC804_RS05320 (ABC804_05320) - 979369..980355 (-) 987 WP_000204733.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=997433 ABC804_RS05300 WP_001289493.1 976880..977689(+) (vicX) [Streptococcus pneumoniae strain M264-3]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=997433 ABC804_RS05300 WP_001289493.1 976880..977689(+) (vicX) [Streptococcus pneumoniae strain M264-3]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment