Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ABC811_RS07465 Genome accession   NZ_CP155535
Coordinates   1448178..1448444 (-) Length   88 a.a.
NCBI ID   WP_001818764.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PJ755/1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1448522..1449016 1448178..1448444 flank 78


Gene organization within MGE regions


Location: 1448178..1449016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC811_RS07465 (ABC811_07460) HI0659 1448178..1448444 (-) 267 WP_001818764.1 helix-turn-helix transcriptional regulator Machinery gene
  ABC811_RS07470 (ABC811_07465) - 1448528..1449016 (-) 489 Protein_1477 IS30 family transposase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9627.08 Da        Isoelectric Point: 4.2720

>NTDB_id=997328 ABC811_RS07465 WP_001818764.1 1448178..1448444(-) (HI0659) [Streptococcus pneumoniae strain PJ755/1]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=997328 ABC811_RS07465 WP_001818764.1 1448178..1448444(-) (HI0659) [Streptococcus pneumoniae strain PJ755/1]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAGTGAGTCAACCTGTCATAGCTA
GGATGGAAACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

57.143

87.5

0.5

Multiple sequence alignment