Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | ABC799_RS10835 | Genome accession | NZ_CP155534 |
| Coordinates | 2092029..2093390 (-) | Length | 453 a.a. |
| NCBI ID | WP_078139281.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain DCC1476 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2080963..2145938 | 2092029..2093390 | within | 0 |
Gene organization within MGE regions
Location: 2080963..2145938
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABC799_RS10780 (ABC799_10780) | recO | 2080963..2081733 (-) | 771 | WP_000616167.1 | DNA repair protein RecO | - |
| ABC799_RS10785 (ABC799_10785) | - | 2081730..2082899 (-) | 1170 | WP_000366345.1 | pyridoxal phosphate-dependent aminotransferase | - |
| ABC799_RS10790 (ABC799_10790) | - | 2083048..2084058 (+) | 1011 | WP_000009158.1 | YeiH family protein | - |
| ABC799_RS10795 (ABC799_10795) | - | 2084087..2084605 (-) | 519 | WP_000693129.1 | hypothetical protein | - |
| ABC799_RS10800 (ABC799_10800) | - | 2084646..2085083 (-) | 438 | WP_000076479.1 | CoA-binding protein | - |
| ABC799_RS10805 (ABC799_10805) | polA | 2085168..2087801 (-) | 2634 | WP_001812977.1 | DNA polymerase I | - |
| ABC799_RS10810 (ABC799_10810) | - | 2088057..2088964 (+) | 908 | Protein_2094 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ABC799_RS10815 (ABC799_10815) | - | 2089091..2089372 (+) | 282 | Protein_2095 | ISL3 family transposase | - |
| ABC799_RS10820 (ABC799_10820) | - | 2089506..2090474 (-) | 969 | WP_000010163.1 | ribose-phosphate diphosphokinase | - |
| ABC799_RS10825 (ABC799_10825) | - | 2090619..2091434 (-) | 816 | WP_000749763.1 | PrsW family intramembrane metalloprotease | - |
| ABC799_RS10830 (ABC799_10830) | - | 2091459..2091956 (-) | 498 | WP_001809263.1 | carbonic anhydrase | - |
| ABC799_RS10835 (ABC799_10835) | radA | 2092029..2093390 (-) | 1362 | WP_078139281.1 | DNA repair protein RadA | Machinery gene |
| ABC799_RS10840 (ABC799_10840) | - | 2093404..2093919 (-) | 516 | WP_000691236.1 | histidine phosphatase family protein | - |
| ABC799_RS10845 (ABC799_10845) | - | 2093921..2094364 (-) | 444 | WP_000701992.1 | dUTP diphosphatase | - |
| ABC799_RS10855 (ABC799_10855) | tadA | 2094551..2095018 (-) | 468 | WP_000291870.1 | tRNA adenosine(34) deaminase TadA | - |
| ABC799_RS10860 (ABC799_10860) | - | 2095298..2095447 (+) | 150 | WP_001030863.1 | hypothetical protein | - |
| ABC799_RS10865 (ABC799_10865) | - | 2095589..2095768 (+) | 180 | WP_001209433.1 | hypothetical protein | - |
| ABC799_RS10870 (ABC799_10870) | - | 2095988..2096944 (-) | 957 | WP_000350506.1 | N-acetylmuramoyl-L-alanine amidase family protein | - |
| ABC799_RS10875 (ABC799_10875) | - | 2096948..2097280 (-) | 333 | WP_001186228.1 | phage holin | - |
| ABC799_RS10880 (ABC799_10880) | - | 2097284..2097700 (-) | 417 | WP_001165344.1 | phage holin family protein | - |
| ABC799_RS10885 (ABC799_10885) | - | 2097710..2098060 (-) | 351 | WP_000852249.1 | hypothetical protein | - |
| ABC799_RS10890 (ABC799_10890) | - | 2098063..2098266 (-) | 204 | WP_001091112.1 | hypothetical protein | - |
| ABC799_RS10895 (ABC799_10895) | - | 2098247..2098364 (-) | 118 | Protein_2110 | dihydrodipicolinate reductase | - |
| ABC799_RS10900 (ABC799_10900) | - | 2098361..2107432 (-) | 9072 | WP_000639858.1 | phage tail spike protein | - |
| ABC799_RS10905 (ABC799_10905) | - | 2107429..2108127 (-) | 699 | WP_000499607.1 | adenylosuccinate synthetase | - |
| ABC799_RS10910 (ABC799_10910) | - | 2108127..2112302 (-) | 4176 | WP_000146316.1 | phage tail tape measure protein | - |
| ABC799_RS10915 (ABC799_10915) | - | 2112359..2112589 (-) | 231 | WP_000087359.1 | hypothetical protein | - |
| ABC799_RS10920 (ABC799_10920) | - | 2112838..2113131 (-) | 294 | WP_001151570.1 | hypothetical protein | - |
| ABC799_RS10925 (ABC799_10925) | - | 2113180..2113776 (-) | 597 | WP_000216338.1 | major tail protein | - |
| ABC799_RS10930 (ABC799_10930) | - | 2113793..2114173 (-) | 381 | WP_000588568.1 | hypothetical protein | - |
| ABC799_RS10935 (ABC799_10935) | - | 2114173..2114571 (-) | 399 | WP_000094296.1 | hypothetical protein | - |
| ABC799_RS10940 (ABC799_10940) | - | 2114564..2114953 (-) | 390 | WP_000830392.1 | hypothetical protein | - |
| ABC799_RS10945 (ABC799_10945) | - | 2114940..2115128 (-) | 189 | WP_000598695.1 | hypothetical protein | - |
| ABC799_RS10950 (ABC799_10950) | - | 2115121..2115411 (-) | 291 | WP_000401888.1 | hypothetical protein | - |
| ABC799_RS10955 (ABC799_10955) | - | 2115425..2116540 (-) | 1116 | WP_000976935.1 | phage major capsid protein | - |
| ABC799_RS10960 (ABC799_10960) | - | 2116559..2117281 (-) | 723 | WP_000152602.1 | head maturation protease, ClpP-related | - |
| ABC799_RS10965 (ABC799_10965) | - | 2117262..2118410 (-) | 1149 | WP_000506469.1 | phage portal protein | - |
| ABC799_RS10970 (ABC799_10970) | - | 2118467..2120107 (-) | 1641 | WP_000623345.1 | terminase TerL endonuclease subunit | - |
| ABC799_RS10975 (ABC799_10975) | - | 2120104..2120442 (-) | 339 | WP_000393460.1 | hypothetical protein | - |
| ABC799_RS10980 (ABC799_10980) | - | 2120561..2120857 (-) | 297 | WP_000568035.1 | HNH endonuclease | - |
| ABC799_RS10985 (ABC799_10985) | - | 2120854..2121060 (-) | 207 | WP_000676039.1 | hypothetical protein | - |
| ABC799_RS10990 (ABC799_10990) | - | 2121226..2121792 (-) | 567 | WP_000261915.1 | tyrosine-type recombinase/integrase | - |
| ABC799_RS10995 (ABC799_10995) | - | 2121879..2122304 (-) | 426 | WP_000963208.1 | DUF1492 domain-containing protein | - |
| ABC799_RS11000 (ABC799_11000) | - | 2122308..2122706 (-) | 399 | WP_000612378.1 | YopX family protein | - |
| ABC799_RS11005 (ABC799_11005) | - | 2122718..2123101 (-) | 384 | WP_001092016.1 | hypothetical protein | - |
| ABC799_RS11010 (ABC799_11010) | - | 2123098..2124180 (-) | 1083 | WP_000670044.1 | DNA cytosine methyltransferase | - |
| ABC799_RS11015 (ABC799_11015) | - | 2124211..2124498 (-) | 288 | WP_000194855.1 | hypothetical protein | - |
| ABC799_RS11020 (ABC799_11020) | - | 2124498..2125085 (-) | 588 | WP_001030728.1 | DUF1642 domain-containing protein | - |
| ABC799_RS11025 (ABC799_11025) | - | 2125078..2125578 (-) | 501 | WP_001041165.1 | DUF1642 domain-containing protein | - |
| ABC799_RS11030 (ABC799_11030) | - | 2125580..2125897 (-) | 318 | WP_000969670.1 | hypothetical protein | - |
| ABC799_RS11035 (ABC799_11035) | - | 2126065..2126232 (-) | 168 | WP_000233203.1 | hypothetical protein | - |
| ABC799_RS11040 (ABC799_11040) | - | 2126359..2126586 (-) | 228 | WP_000891969.1 | hypothetical protein | - |
| ABC799_RS11045 (ABC799_11045) | - | 2126586..2126780 (-) | 195 | WP_000470302.1 | hypothetical protein | - |
| ABC799_RS11050 (ABC799_11050) | - | 2126795..2127565 (-) | 771 | WP_000228211.1 | ATP-binding protein | - |
| ABC799_RS11055 (ABC799_11055) | - | 2127559..2127717 (-) | 159 | WP_000538418.1 | hypothetical protein | - |
| ABC799_RS11060 (ABC799_11060) | - | 2127705..2128505 (-) | 801 | WP_001289776.1 | phage replisome organizer N-terminal domain-containing protein | - |
| ABC799_RS11065 (ABC799_11065) | - | 2128498..2128794 (-) | 297 | WP_000391807.1 | hypothetical protein | - |
| ABC799_RS11070 (ABC799_11070) | - | 2128810..2129130 (-) | 321 | WP_000462831.1 | hypothetical protein | - |
| ABC799_RS11075 (ABC799_11075) | - | 2129216..2129473 (-) | 258 | WP_000370958.1 | hypothetical protein | - |
| ABC799_RS11080 (ABC799_11080) | - | 2129486..2130199 (-) | 714 | WP_001002352.1 | ORF6C domain-containing protein | - |
| ABC799_RS11085 (ABC799_11085) | - | 2130342..2130545 (-) | 204 | WP_000032098.1 | helix-turn-helix transcriptional regulator | - |
| ABC799_RS11090 (ABC799_11090) | - | 2130557..2130703 (-) | 147 | WP_000389576.1 | hypothetical protein | - |
| ABC799_RS11095 (ABC799_11095) | - | 2130822..2131043 (+) | 222 | WP_000041098.1 | hypothetical protein | - |
| ABC799_RS11100 (ABC799_11100) | - | 2131421..2131783 (+) | 363 | WP_000466344.1 | helix-turn-helix transcriptional regulator | - |
| ABC799_RS11105 (ABC799_11105) | - | 2131796..2132179 (+) | 384 | WP_000136455.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ABC799_RS11110 (ABC799_11110) | - | 2132192..2133115 (+) | 924 | WP_000122590.1 | exonuclease domain-containing protein | - |
| ABC799_RS11115 (ABC799_11115) | - | 2133294..2134442 (+) | 1149 | WP_000876726.1 | site-specific integrase | - |
| ABC799_RS11120 (ABC799_11120) | - | 2134706..2135992 (-) | 1287 | WP_000205044.1 | adenylosuccinate synthase | - |
| ABC799_RS11125 (ABC799_11125) | comW | 2136223..2136459 (-) | 237 | WP_000939545.1 | sigma(X)-activator ComW | Regulator |
| ABC799_RS11130 (ABC799_11130) | - | 2136725..2137586 (+) | 862 | Protein_2157 | transposase | - |
| ABC799_RS11135 (ABC799_11135) | - | 2137621..2137830 (-) | 210 | Protein_2158 | transposase | - |
| ABC799_RS11170 (ABC799_11170) | comX/comX2 | 2143379..2143858 (-) | 480 | WP_000588911.1 | sigma-70 family RNA polymerase sigma factor | Regulator |
| ABC799_RS11175 (ABC799_11175) | ftsH | 2143980..2145938 (-) | 1959 | WP_000744558.1 | ATP-dependent zinc metalloprotease FtsH | - |
Sequence
Protein
Download Length: 453 a.a. Molecular weight: 49420.89 Da Isoelectric Point: 6.5137
>NTDB_id=997295 ABC799_RS10835 WP_078139281.1 2092029..2093390(-) (radA) [Streptococcus pneumoniae strain DCC1476]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSTNVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITLPKEIQVIGVTTIQEVLKKVFA
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSTNVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITLPKEIQVIGVTTIQEVLKKVFA
Nucleotide
Download Length: 1362 bp
>NTDB_id=997295 ABC799_RS10835 WP_078139281.1 2092029..2093390(-) (radA) [Streptococcus pneumoniae strain DCC1476]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTGGAAGAGGTTGAGGTTGCCGAAGTTAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTAGCTGAGGTGACTTCCACCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTG
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTTATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTTCTCCTACA
AGTCTCAACCCAGTTGTCCCAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGCTTAGGTGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAAGTGGAG
CGTATCCAGCCAGACTTTCTCATTATTGATTCCATCCAGACCATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAGGTGCGTGAAGTGACCGCTGAACTCATGCAGTTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGTCATG
TGACCAAAGAAGGAACCTTGGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCACACCTTTCGTATTTTGAGAGCGGTCAAAAATCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGCGGCTTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCCTCCATCG
TTGTAACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTTAAATTGGATGAACCTGCGATTGACTTGGCTGTTGCAGTTGCTA
TTGCTTCGAGCTACAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTCGGAGAACTGGGCTTGACAGGAGAGATTCGG
CGCGTGAATCGTATTGAGCAACGCATCAACGAAGCTGCTAAACTGGGCTTTACTAAGATTTATGTACCTAAGAATTCCTT
GACAGGAATCACTCTGCCTAAGGAAATTCAGGTCATTGGCGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTGGAAGAGGTTGAGGTTGCCGAAGTTAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTAGCTGAGGTGACTTCCACCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTG
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTTATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTTCTCCTACA
AGTCTCAACCCAGTTGTCCCAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGCTTAGGTGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAAGTGGAG
CGTATCCAGCCAGACTTTCTCATTATTGATTCCATCCAGACCATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAGGTGCGTGAAGTGACCGCTGAACTCATGCAGTTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGTCATG
TGACCAAAGAAGGAACCTTGGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCACACCTTTCGTATTTTGAGAGCGGTCAAAAATCGTTTTGGTTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGCGGCTTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCCTCCATCG
TTGTAACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTTAAATTGGATGAACCTGCGATTGACTTGGCTGTTGCAGTTGCTA
TTGCTTCGAGCTACAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTCGGAGAACTGGGCTTGACAGGAGAGATTCGG
CGCGTGAATCGTATTGAGCAACGCATCAACGAAGCTGCTAAACTGGGCTTTACTAAGATTTATGTACCTAAGAATTCCTT
GACAGGAATCACTCTGCCTAAGGAAATTCAGGTCATTGGCGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus pneumoniae Rx1 |
99.779 |
100 |
0.998 |
| radA | Streptococcus pneumoniae D39 |
99.779 |
100 |
0.998 |
| radA | Streptococcus pneumoniae R6 |
99.779 |
100 |
0.998 |
| radA | Streptococcus pneumoniae TIGR4 |
99.779 |
100 |
0.998 |
| radA | Streptococcus mitis NCTC 12261 |
99.338 |
100 |
0.993 |
| radA | Streptococcus mitis SK321 |
99.338 |
100 |
0.993 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
62.693 |
100 |
0.627 |