Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ABC799_RS02065 Genome accession   NZ_CP155534
Coordinates   373656..375494 (+) Length   612 a.a.
NCBI ID   WP_000385065.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain DCC1476     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 368656..380494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC799_RS02045 (ABC799_02045) - 368863..369696 (+) 834 WP_000806572.1 carbohydrate ABC transporter permease -
  ABC799_RS02050 (ABC799_02050) - 369703..369843 (+) 141 WP_000692990.1 hypothetical protein -
  ABC799_RS02055 (ABC799_02055) gtfA 370054..371496 (+) 1443 WP_001122351.1 sucrose phosphorylase -
  ABC799_RS02060 (ABC799_02060) - 371634..372827 (+) 1194 WP_000835622.1 O-antigen ligase -
  ABC799_RS02065 (ABC799_02065) amiA3 373656..375494 (+) 1839 WP_000385065.1 peptide ABC transporter substrate-binding protein Regulator
  ABC799_RS02070 (ABC799_02070) amiC 375561..377057 (+) 1497 WP_000759905.1 ABC transporter permease Regulator
  ABC799_RS02075 (ABC799_02075) amiD 377057..377983 (+) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  ABC799_RS02080 (ABC799_02080) amiE 377992..379059 (+) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  ABC799_RS02085 (ABC799_02085) amiF 379070..379996 (+) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67757.06 Da        Isoelectric Point: 4.5835

>NTDB_id=997252 ABC799_RS02065 WP_000385065.1 373656..375494(+) (amiA3) [Streptococcus pneumoniae strain DCC1476]
MDYLISSKNSTTVVTSNGIDGLFTNDNYGNLAPAVAEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKH
AADKKSEAMYLAENSVKGLADYLSGTSTDFSTVGVKAVDDYTLQYTLNQPEPFWNSKLTYSIFWPLNEEFETSKGSDFAK
PTDPTSLLYNGPFLLKGLTAKSSVEFVKNEQYWDKENVHLDTINLAYYDGSDQESLERNFTSGAYSYARLYPTSSNYSKV
AEEYKDNIYYTQSGSGIAGLGVNIDRQSYNYTSKTTDSEKVATKKALLNKDFRQALNFALDRSAYSAQINGKDGAALAVR
NLFVKPDFVSAGEKTFGDLVAAQLPAYGDEWKGVNLADGQDGLFNVDKAKAEFAKAKKALEADGVQFPIHLDVPVDQASK
NYISRIQSFKQSVETVLGVENVVVDIQQMTSDEFLNITYYAANASSEDWDVSGGVSWGPDYQDPSTYLDILKTTSSETTK
TYLGFDNPNSPSVVQVGLKEYDKLVDEAARETSDLNVRYEKYAAAQAWLTDSSLFIPAMASSGAAPVLSRIVPFTGASAQ
TGSKGSDVYFKYLKLQDKVVTKEEYEKAREKWLKEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=997252 ABC799_RS02065 WP_000385065.1 373656..375494(+) (amiA3) [Streptococcus pneumoniae strain DCC1476]
TTGGACTACCTGATTTCAAGTAAAAATAGTACAACAGTAGTGACTTCAAATGGGATTGATGGTTTATTCACTAACGATAA
TTACGGTAATCTTGCTCCTGCAGTTGCAGAGGATTGGGAAGTCTCTAAGGATGGTTTGACCTACACTTATAAGATTCGTA
AAGGGGTTAAATGGTTTACCTCTGATGGAGAAGAATATGCAGAGGTGACGGCTAAAGATTTCGTGAACGGTTTAAAACAC
GCAGCAGATAAAAAATCAGAAGCTATGTATTTAGCTGAAAATTCGGTTAAAGGCTTGGCAGATTATCTATCAGGAACTTC
AACAGATTTTTCAACAGTTGGTGTCAAGGCGGTTGATGATTATACGTTACAATACACTTTGAACCAGCCTGAACCGTTCT
GGAACTCTAAGTTGACCTATTCTATTTTCTGGCCTCTGAATGAAGAATTCGAAACATCAAAAGGAAGCGATTTTGCTAAA
CCAACAGATCCGACATCCTTGCTTTATAATGGTCCATTCTTGTTGAAAGGGTTGACTGCAAAATCTTCTGTAGAGTTTGT
AAAAAATGAGCAATATTGGGATAAAGAAAATGTCCACCTAGATACTATCAATCTAGCTTACTATGATGGATCAGATCAGG
AGTCGCTAGAGCGTAACTTCACTAGTGGAGCTTATAGTTATGCCCGTCTTTACCCTACCAGCTCCAACTATTCTAAGGTT
GCAGAAGAATACAAGGACAATATCTATTACACACAATCAGGCTCTGGGATTGCTGGTCTGGGTGTGAATATTGATCGCCA
AAGTTACAACTATACTTCTAAAACTACAGATTCAGAGAAAGTAGCTACTAAGAAGGCATTGCTTAACAAAGATTTCCGTC
AAGCCTTGAATTTTGCTCTTGATCGCTCAGCTTACTCAGCTCAAATCAATGGTAAAGATGGAGCAGCTTTAGCAGTTCGT
AATTTATTTGTAAAACCAGACTTTGTTTCAGCTGGTGAGAAGACCTTTGGTGATTTAGTCGCTGCTCAACTTCCTGCTTA
TGGTGATGAGTGGAAAGGTGTGAATTTAGCTGATGGGCAGGATGGTTTATTCAATGTTGACAAGGCCAAGGCAGAGTTTG
CGAAAGCTAAGAAAGCTTTAGAAGCAGACGGCGTTCAGTTTCCTATTCATCTGGACGTTCCAGTAGACCAAGCATCAAAA
AACTACATATCTCGTATTCAGTCCTTTAAACAATCTGTAGAAACAGTTCTTGGTGTTGAAAATGTCGTTGTTGATATTCA
ACAAATGACAAGTGATGAATTCCTTAATATTACTTACTATGCTGCCAATGCTTCATCTGAGGATTGGGATGTATCAGGAG
GAGTTTCATGGGGTCCAGACTATCAAGACCCATCTACTTACCTGGATATTTTAAAAACAACTAGCAGTGAAACTACAAAA
ACATATTTAGGATTTGATAATCCAAATAGCCCTTCAGTAGTTCAAGTTGGTTTGAAAGAATACGATAAATTAGTTGATGA
AGCTGCCAGAGAGACAAGCGACTTGAATGTCCGTTATGAAAAATATGCAGCGGCTCAAGCATGGTTGACAGATAGTTCAC
TCTTTATTCCTGCTATGGCTTCTTCTGGTGCAGCACCAGTGCTTTCACGAATTGTTCCATTTACTGGAGCTTCTGCGCAA
ACAGGCTCTAAGGGGTCAGATGTTTACTTCAAATATTTGAAATTACAAGATAAAGTGGTGACTAAGGAAGAGTATGAAAA
AGCTCGTGAAAAATGGTTGAAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(31-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

67.7

100

0.678
  amiA Streptococcus salivarius strain HSISS4

67.81

100

0.678
  amiA3 Streptococcus thermophilus LMG 18311

67.537

100

0.676

Multiple sequence alignment