Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABC814_RS09620 Genome accession   NZ_CP155533
Coordinates   1861066..1862097 (-) Length   343 a.a.
NCBI ID   WP_000506424.1    Uniprot ID   A0A0B7LYB2
Organism   Streptococcus pneumoniae strain Spn1439-106     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1856066..1867097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC814_RS09575 (ABC814_09575) - 1856214..1856975 (-) 762 WP_001107743.1 SDR family NAD(P)-dependent oxidoreductase -
  ABC814_RS09580 (ABC814_09580) ytpR 1857008..1857634 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  ABC814_RS09585 (ABC814_09585) - 1857650..1857967 (-) 318 WP_000615767.1 thioredoxin family protein -
  ABC814_RS09590 (ABC814_09590) - 1857964..1858263 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  ABC814_RS09595 (ABC814_09595) - 1858461..1858688 (-) 228 Protein_1879 N-acetylmuramoyl-L-alanine amidase family protein -
  ABC814_RS09600 (ABC814_09600) - 1858899..1859573 (-) 675 WP_000725719.1 hypothetical protein -
  ABC814_RS09605 (ABC814_09605) - 1859578..1860024 (-) 447 WP_000776596.1 LytTR family DNA-binding domain-containing protein -
  ABC814_RS09610 (ABC814_09610) - 1860138..1860641 (-) 504 WP_000800945.1 phosphatase PAP2 family protein -
  ABC814_RS09615 (ABC814_09615) - 1860638..1861000 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  ABC814_RS09620 (ABC814_09620) rcrQ 1861066..1862097 (-) 1032 WP_000506424.1 ATP-binding cassette domain-containing protein Regulator
  ABC814_RS09625 (ABC814_09625) rcrP 1862104..1862925 (-) 822 WP_000601682.1 ABC transporter permease Regulator
  ABC814_RS09630 (ABC814_09630) - 1862942..1863413 (-) 472 Protein_1886 MarR family winged helix-turn-helix transcriptional regulator -
  ABC814_RS09635 (ABC814_09635) - 1863537..1864253 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ABC814_RS09640 (ABC814_09640) ply 1865134..1866549 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  ABC814_RS09645 (ABC814_09645) - 1866560..1866970 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37918.12 Da        Isoelectric Point: 4.4764

>NTDB_id=997187 ABC814_RS09620 WP_000506424.1 1861066..1862097(-) (rcrQ) [Streptococcus pneumoniae strain Spn1439-106]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=997187 ABC814_RS09620 WP_000506424.1 1861066..1862097(-) (rcrQ) [Streptococcus pneumoniae strain Spn1439-106]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTACAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7LYB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

65.306

0.528
  rcrP Streptococcus mutans UA159

37.861

100

0.382

Multiple sequence alignment