Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ABC814_RS09340 Genome accession   NZ_CP155533
Coordinates   1820839..1821549 (+) Length   236 a.a.
NCBI ID   WP_083973658.1    Uniprot ID   A0A4G3V364
Organism   Streptococcus pneumoniae strain Spn1439-106     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815839..1826549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC814_RS09325 (ABC814_09325) - 1816380..1816628 (-) 249 WP_000364990.1 YneF family protein -
  ABC814_RS09330 (ABC814_09330) treC 1816884..1818509 (-) 1626 WP_000171226.1 alpha,alpha-phosphotrehalase -
  ABC814_RS09335 (ABC814_09335) treP 1818687..1820654 (-) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  ABC814_RS09340 (ABC814_09340) treR 1820839..1821549 (+) 711 WP_083973658.1 trehalose operon repressor Regulator
  ABC814_RS09345 (ABC814_09345) - 1821705..1823040 (+) 1336 Protein_1851 ISL3 family transposase -
  ABC814_RS09350 (ABC814_09350) - 1823139..1824445 (+) 1307 Protein_1852 transposase -
  ABC814_RS09355 (ABC814_09355) amiF 1824579..1825505 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27637.80 Da        Isoelectric Point: 8.9698

>NTDB_id=997180 ABC814_RS09340 WP_083973658.1 1820839..1821549(+) (treR) [Streptococcus pneumoniae strain Spn1439-106]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKTLSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=997180 ABC814_RS09340 WP_083973658.1 1820839..1821549(+) (treR) [Streptococcus pneumoniae strain Spn1439-106]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGACCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

58.898

100

0.589

Multiple sequence alignment