Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   ABC810_RS01075 Genome accession   NZ_CP155532
Coordinates   215626..216072 (+) Length   148 a.a.
NCBI ID   WP_001811371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP264     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 210626..221072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC810_RS01035 (ABC810_01035) - 210679..211737 (+) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  ABC810_RS01040 (ABC810_01040) - 211888..212253 (+) 366 WP_000286415.1 DUF1033 family protein -
  ABC810_RS01045 (ABC810_01045) comGA/cglA/cilD 212329..213270 (+) 942 WP_000249573.1 competence type IV pilus ATPase ComGA Machinery gene
  ABC810_RS01050 (ABC810_01050) comGB/cglB 213218..214234 (+) 1017 WP_078134418.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABC810_RS01055 (ABC810_01055) comGC/cglC 214236..214562 (+) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  ABC810_RS01060 (ABC810_01060) comGD/cglD 214555..214959 (+) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABC810_RS01065 (ABC810_01065) comGE/cglE 214922..215224 (+) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABC810_RS01070 (ABC810_01070) comGF/cglF 215187..215648 (+) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABC810_RS01075 (ABC810_01075) comGG/cglG 215626..216072 (+) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABC810_RS01080 (ABC810_01080) - 216175..216769 (+) 595 Protein_196 methyltransferase domain-containing protein -
  ABC810_RS01085 (ABC810_01085) comYH 216830..217783 (+) 954 WP_000345133.1 class I SAM-dependent methyltransferase Machinery gene
  ABC810_RS01090 (ABC810_01090) - 217834..219024 (+) 1191 WP_000167766.1 acetate kinase -
  ABC810_RS01095 (ABC810_01095) - 219025..219156 (+) 132 WP_000768904.1 hypothetical protein -
  ABC810_RS01100 (ABC810_01100) rnpA 219173..219544 (+) 372 WP_000739246.1 ribonuclease P protein component -
  ABC810_RS01105 (ABC810_01105) - 219519..220343 (+) 825 WP_000727904.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 148 a.a.        Molecular weight: 17229.91 Da        Isoelectric Point: 10.5573

>NTDB_id=997084 ABC810_RS01075 WP_001811371.1 215626..216072(+) (comGG/cglG) [Streptococcus pneumoniae strain SP264]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKNQKRSLKRKRIPSQFNYNALNPE

Nucleotide


Download         Length: 447 bp        

>NTDB_id=997084 ABC810_RS01075 WP_001811371.1 215626..216072(+) (comGG/cglG) [Streptococcus pneumoniae strain SP264]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGCGGAGAAAAAAAATCAGAAGAGAAGCCTGAAAAGAA
AGAGAATTCCTAGTCAATTCAACTATAATGCGTTGAATCCAGAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae D39

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae R6

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

79.054

0.75

  comGG/cglG Streptococcus mitis NCTC 12261

89.344

82.432

0.736

  comGG/cglG Streptococcus mitis SK321

86.066

82.432

0.709


Multiple sequence alignment