Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrQ   Type   Regulator
Locus tag   ABC803_RS02070 Genome accession   NZ_CP155531
Coordinates   378012..378995 (+) Length   327 a.a.
NCBI ID   WP_277769896.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SN36255     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 373012..383995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC803_RS02045 (ABC803_02045) - 373091..373501 (+) 411 WP_000595763.1 hypothetical protein -
  ABC803_RS02050 (ABC803_02050) ply 373512..374927 (+) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  ABC803_RS02055 (ABC803_02055) - 375808..376524 (+) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ABC803_RS02060 (ABC803_02060) - 376648..377119 (+) 472 Protein_377 MarR family winged helix-turn-helix transcriptional regulator -
  ABC803_RS02065 (ABC803_02065) rcrP 377136..377957 (+) 822 WP_000601671.1 ABC transporter permease Regulator
  ABC803_RS02070 (ABC803_02070) rcrQ 378012..378995 (+) 984 WP_277769896.1 ATP-binding cassette domain-containing protein Regulator
  ABC803_RS02075 (ABC803_02075) - 379061..379423 (+) 363 WP_000078804.1 DUF2200 family protein -
  ABC803_RS02080 (ABC803_02080) - 379420..379923 (+) 504 WP_000800942.1 phosphatase PAP2 family protein -
  ABC803_RS02085 (ABC803_02085) - 380037..380483 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  ABC803_RS02090 (ABC803_02090) - 380488..381162 (+) 675 WP_000725707.1 hypothetical protein -
  ABC803_RS02095 (ABC803_02095) - 381405..381602 (+) 198 Protein_384 N-acetylmuramoyl-L-alanine amidase family protein -
  ABC803_RS02100 (ABC803_02100) - 381627..381758 (-) 132 WP_001811306.1 hypothetical protein -
  ABC803_RS02105 (ABC803_02105) - 381852..382151 (+) 300 WP_001815024.1 DUF4651 domain-containing protein -
  ABC803_RS02110 (ABC803_02110) - 382148..382465 (+) 318 WP_000615767.1 thioredoxin family protein -
  ABC803_RS02115 (ABC803_02115) ytpR 382481..383107 (+) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  ABC803_RS02120 (ABC803_02120) - 383140..383901 (+) 762 WP_001107762.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence


Protein


Download         Length: 327 a.a.        Molecular weight: 36250.05 Da        Isoelectric Point: 4.4301

>NTDB_id=997020 ABC803_RS02070 WP_277769896.1 378012..378995(+) (rcrQ) [Streptococcus pneumoniae strain SN36255]
MVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTVAFIGSTGSGKSTLVNL
IPRFYDVSAGEILVDGVNVQDYDFSVTAHAGQRVAIVGPTGAGKTTIVNLLMKFYEIDKRSIRIDGVDTKAMTRSEVHDA
FSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVGQKQLLTIACALLKDAS
LLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSIIRNADLILVMKDGNIIEQGNYEELMAQGGFYADLYNSQF
TEDEAEE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=997020 ABC803_RS02070 WP_277769896.1 378012..378995(+) (rcrQ) [Streptococcus pneumoniae strain SN36255]
ATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGA
TGAAAACTTCAAAGGTCAGGTCGAGTTTAAGGATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATG
TTAGCTTTAAAGCAGAAACTGGTCAAACAGTGGCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTG
ATTCCACGTTTCTACGACGTGTCAGCAGGAGAAATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGTGAC
AGCTCATGCTGGTCAAAGGGTTGCCATTGTTGGGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAAT
TCTATGAGATTGATAAGAGAAGTATTCGCATTGATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCC
TTTTCAATGGTCTTGCAGGATACCTGGCTCTTTGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAG
TGATGAACGAATGATGGAAGCTAGTAAGGCTGTGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCA
TCTTGGATGACACCGTGACCTTGTCTGTAGGACAAAAACAACTATTGACTATTGCTTGTGCCCTTCTTAAGGATGCATCG
CTTTTGATTTTGGATGAGGCGACTTCTTCTGTTGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGAT
GGAAGGACGCACATCCTTTGTCATTGCCCACCGCTTGTCAATCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATG
GAAATATCATCGAGCAAGGCAACTATGAGGAACTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTT
ACAGAAGATGAAGCAGAAGAATAA

Domains


Predicted by InterproScan.

(104-249)

(52-101)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

78.571

68.502

0.538


Multiple sequence alignment