Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   GZL_RS19150 Genome accession   NZ_CP003987
Coordinates   4573718..4575130 (+) Length   470 a.a.
NCBI ID   WP_039634089.1    Uniprot ID   A0ABY8AA92
Organism   Streptomyces sp. 769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4568718..4580130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZL_RS19130 (GZL_04221) - 4568781..4569593 (-) 813 WP_039634081.1 sugar phosphate isomerase/epimerase -
  GZL_RS19135 (GZL_04222) - 4569858..4570784 (-) 927 WP_039634083.1 Ppx/GppA phosphatase family protein -
  GZL_RS19140 (GZL_04223) - 4570842..4571708 (+) 867 WP_039634085.1 hypothetical protein -
  GZL_RS19145 (GZL_04224) - 4571733..4573490 (-) 1758 WP_039634087.1 sigma-70 family RNA polymerase sigma factor -
  GZL_RS19150 (GZL_04225) radA/sms 4573718..4575130 (+) 1413 WP_039634089.1 DNA repair protein RadA Machinery gene
  GZL_RS19155 (GZL_04226) disA 4575263..4576384 (+) 1122 WP_039634091.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  GZL_RS19160 (GZL_04227) - 4576635..4577633 (-) 999 WP_039641089.1 NAD-dependent epimerase/dehydratase family protein -
  GZL_RS47760 (GZL_04228) - 4577762..4578589 (-) 828 WP_039634093.1 hypothetical protein -
  GZL_RS19170 (GZL_04229) - 4578901..4579572 (-) 672 WP_239010082.1 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49524.71 Da        Isoelectric Point: 7.7062

>NTDB_id=99702 GZL_RS19150 WP_039634089.1 4573718..4575130(+) (radA/sms) [Streptomyces sp. 769]
MATRKSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAPGRVTTAALPIGQVDGKQATARSTGVPE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASAEHRTLYVTGEESAGQVRLRADRIGALDEDLYLAAETDLSAV
LGHLDSVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPTDPGKIPDGMRVMEVADVGQALSVLPKRVRREAPREEEARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=99702 GZL_RS19150 WP_039634089.1 4573718..4575130(+) (radA/sms) [Streptomyces sp. 769]
ATGGCAACTCGTAAATCGTCGGCCAAGGATCGCCCCTCGTACCGCTGCACCGAGTGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACCACCGCGCCCG
GCCGGGTCACCACCGCCGCCCTGCCCATCGGCCAGGTCGACGGCAAGCAGGCCACCGCCCGCTCGACCGGCGTGCCCGAG
CTGGACCGCGTCCTGGGCGGCGGGCTGGTCCCCGGCGCGGTCGTGCTGCTGGCCGGCGAGCCCGGCGTCGGCAAGTCCAC
CCTCCTGCTGGACGTCGCCGCCAAGGCCGCCTCCGCCGAGCACCGCACGCTCTATGTGACCGGCGAGGAGTCCGCCGGCC
AGGTCCGGCTGCGCGCCGACCGCATCGGCGCCCTCGACGAGGATCTCTATCTGGCCGCCGAGACGGACCTGTCCGCCGTC
CTCGGCCATCTGGACAGCGTCAAGCCCTCACTGCTGATCATGGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGACGG
CGCCCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGGGCGTCCAAGGAGCGCGGCATGTCCACCC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGCCCCCGCCTCCTGGAGCACCTGGTCGACGTCGTCCTGCAC
TTCGAGGGCGACCGGCACGCCCGCCTCCGCCTCGTCCGCGGCGTGAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGCCTCTTCCTGACCCGCCGCGCCGAGCCGGTGC
CCGGGACGTGCCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTGACCGTCGACTCCCAG
ATCCCCTCCCCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCGCCCTGGGCAAGCGCGACATCTACAGCGCCACGGTCGGCGGGGTGAAGCTCAGCGAGCCGGCCGCCGACC
TCGCCGTCGCCCTCGCGCTGGCCAGCGCCGCCAGCGACACCCCGCTGCCCAAGAACCTCGTCGCCATCGGCGAGGTCGGG
CTGGCCGGGGAGGTCCGGAGGGTCACCGGCGTCCAGCGCCGCCTGTCGGAGGCCGCCCGGCTCGGCTTCACGCACGCCCT
GGTCCCCACCGACCCCGGCAAGATCCCCGACGGGATGCGGGTCATGGAGGTCGCCGACGTCGGACAGGCGTTGTCCGTGC
TGCCCAAGCGGGTCCGCCGGGAGGCCCCGCGGGAGGAGGAAGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(79-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.363

96.17

0.417
  radA Streptococcus pneumoniae D39

42.92

96.17

0.413
  radA Streptococcus pneumoniae R6

42.92

96.17

0.413
  radA Streptococcus pneumoniae Rx1

42.92

96.17

0.413
  radA Streptococcus pneumoniae TIGR4

42.92

96.17

0.413
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404
  radA Streptococcus mitis SK321

44.289

91.277

0.404

Multiple sequence alignment