Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAH687_RS14835 Genome accession   NZ_CP155530
Coordinates   2881931..2882311 (-) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TN5S8     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2876931..2887311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH687_RS14800 (AAH687_14800) - 2877518..2877748 (-) 231 WP_008343816.1 DUF896 domain-containing protein -
  AAH687_RS14805 (AAH687_14805) - 2877818..2878465 (-) 648 WP_025207396.1 recombinase family protein -
  AAH687_RS14810 (AAH687_14810) yneA 2878483..2878794 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  AAH687_RS14815 (AAH687_14815) lexA 2878954..2879574 (+) 621 WP_035700932.1 transcriptional repressor LexA -
  AAH687_RS14820 (AAH687_14820) - 2879622..2880065 (-) 444 WP_008343821.1 hypothetical protein -
  AAH687_RS14825 (AAH687_14825) - 2880362..2880904 (+) 543 WP_008343822.1 IseA DL-endopeptidase inhibitor family protein -
  AAH687_RS14830 (AAH687_14830) - 2880939..2881787 (-) 849 WP_202734425.1 STAS domain-containing protein -
  AAH687_RS14835 (AAH687_14835) nucA/comI 2881931..2882311 (-) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAH687_RS14840 (AAH687_14840) - 2882539..2884533 (-) 1995 WP_035391939.1 glycosyltransferase family 39 protein -
  AAH687_RS14845 (AAH687_14845) - 2884679..2885587 (-) 909 WP_008343827.1 trypsin-like serine protease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=996965 AAH687_RS14835 WP_224559893.1 2881931..2882311(-) (nucA/comI) [Bacillus altitudinis strain TN5S8]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=996965 AAH687_RS14835 WP_224559893.1 2881931..2882311(-) (nucA/comI) [Bacillus altitudinis strain TN5S8]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTTTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment