Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAH687_RS13400 Genome accession   NZ_CP155530
Coordinates   2601595..2602230 (-) Length   211 a.a.
NCBI ID   WP_019744016.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TN5S8     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2596595..2607230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH687_RS13380 (AAH687_13380) - 2596962..2597666 (+) 705 WP_007500879.1 DnaD domain-containing protein -
  AAH687_RS13385 (AAH687_13385) nth 2597684..2598346 (+) 663 WP_008344602.1 endonuclease III -
  AAH687_RS13390 (AAH687_13390) - 2598343..2598852 (+) 510 WP_019744018.1 YpoC family protein -
  AAH687_RS13395 (AAH687_13395) - 2598888..2601575 (-) 2688 WP_019744017.1 PBP1A family penicillin-binding protein -
  AAH687_RS13400 (AAH687_13400) recU 2601595..2602230 (-) 636 WP_019744016.1 Holliday junction resolvase RecU Machinery gene
  AAH687_RS13405 (AAH687_13405) - 2602277..2603233 (+) 957 WP_144610237.1 DUF2515 domain-containing protein -
  AAH687_RS13410 (AAH687_13410) sspM 2603257..2603361 (-) 105 WP_017359731.1 acid-soluble spore protein SspM -
  AAH687_RS13415 (AAH687_13415) - 2603558..2603791 (+) 234 WP_231131595.1 DUF5446 family protein -
  AAH687_RS13420 (AAH687_13420) - 2603841..2604221 (+) 381 WP_231493314.1 YppE family protein -
  AAH687_RS13425 (AAH687_13425) - 2604330..2604782 (+) 453 WP_017359729.1 YppG family protein -
  AAH687_RS13430 (AAH687_13430) - 2604804..2605223 (-) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  AAH687_RS13435 (AAH687_13435) - 2605392..2605898 (+) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  AAH687_RS13440 (AAH687_13440) - 2605950..2607068 (-) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24322.62 Da        Isoelectric Point: 9.7583

>NTDB_id=996964 AAH687_RS13400 WP_019744016.1 2601595..2602230(-) (recU) [Bacillus altitudinis strain TN5S8]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHNHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=996964 AAH687_RS13400 WP_019744016.1 2601595..2602230(-) (recU) [Bacillus altitudinis strain TN5S8]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACAACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTTCTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

95.735

0.692

Multiple sequence alignment