Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AAH687_RS12260 Genome accession   NZ_CP155530
Coordinates   2395515..2395850 (-) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TN5S8     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2390515..2400850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH687_RS12210 (AAH687_12210) comGC 2390714..2391008 (+) 295 Protein_2351 competence type IV pilus major pilin ComGC -
  AAH687_RS12215 (AAH687_12215) comGD 2391001..2391447 (+) 447 WP_008342187.1 competence type IV pilus minor pilin ComGD -
  AAH687_RS12220 (AAH687_12220) comGE 2391467..2391745 (+) 279 WP_268438649.1 competence type IV pilus minor pilin ComGE -
  AAH687_RS12225 (AAH687_12225) comGF 2391687..2392184 (+) 498 WP_019743636.1 competence type IV pilus minor pilin ComGF -
  AAH687_RS12230 (AAH687_12230) comGG 2392181..2392564 (+) 384 WP_346394184.1 competence type IV pilus minor pilin ComGG -
  AAH687_RS12235 (AAH687_12235) - 2392625..2392825 (+) 201 WP_060781188.1 YqzE family protein -
  AAH687_RS12240 (AAH687_12240) - 2392860..2393186 (-) 327 WP_056705243.1 DUF3889 domain-containing protein -
  AAH687_RS12245 (AAH687_12245) tapA 2393439..2393966 (+) 528 WP_304717077.1 amyloid fiber anchoring/assembly protein TapA -
  AAH687_RS12250 (AAH687_12250) - 2394016..2394588 (+) 573 WP_017357979.1 signal peptidase I -
  AAH687_RS12255 (AAH687_12255) - 2394647..2395447 (+) 801 WP_008342195.1 TasA family protein -
  AAH687_RS12260 (AAH687_12260) sinR 2395515..2395850 (-) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  AAH687_RS12265 (AAH687_12265) - 2395884..2396048 (-) 165 WP_008342197.1 anti-repressor SinI family protein -
  AAH687_RS12270 (AAH687_12270) - 2396233..2397030 (-) 798 WP_007501215.1 YqhG family protein -
  AAH687_RS12275 (AAH687_12275) - 2397045..2398715 (-) 1671 WP_346394190.1 SNF2-related protein -
  AAH687_RS12280 (AAH687_12280) gcvT 2399275..2400372 (+) 1098 WP_212338161.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=996961 AAH687_RS12260 WP_017357978.1 2395515..2395850(-) (sinR) [Bacillus altitudinis strain TN5S8]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=996961 AAH687_RS12260 WP_017357978.1 2395515..2395850(-) (sinR) [Bacillus altitudinis strain TN5S8]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment