Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAH687_RS11925 Genome accession   NZ_CP155530
Coordinates   2339108..2339878 (+) Length   256 a.a.
NCBI ID   WP_008342406.1    Uniprot ID   A0A9X0FVJ5
Organism   Bacillus altitudinis strain TN5S8     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2334108..2344878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH687_RS11895 (AAH687_11895) - 2334438..2336528 (+) 2091 WP_181362757.1 HD family phosphohydrolase -
  AAH687_RS11900 (AAH687_11900) ybeY 2336529..2337008 (+) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  AAH687_RS11905 (AAH687_11905) - 2336986..2337372 (+) 387 WP_008342413.1 diacylglycerol kinase family protein -
  AAH687_RS11910 (AAH687_11910) - 2337485..2337883 (+) 399 WP_008342410.1 cytidine deaminase -
  AAH687_RS11915 (AAH687_11915) era 2337876..2338781 (+) 906 WP_346394147.1 GTPase Era -
  AAH687_RS11920 (AAH687_11920) - 2338929..2339072 (+) 144 WP_008342408.1 YqzL family protein -
  AAH687_RS11925 (AAH687_11925) recO 2339108..2339878 (+) 771 WP_008342406.1 DNA repair protein RecO Machinery gene
  AAH687_RS11930 (AAH687_11930) glyQ 2340208..2341095 (+) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  AAH687_RS11935 (AAH687_11935) glyS 2341088..2343133 (+) 2046 WP_144610278.1 glycine--tRNA ligase subunit beta -
  AAH687_RS11940 (AAH687_11940) - 2343300..2343938 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  AAH687_RS11945 (AAH687_11945) - 2343964..2344785 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29317.03 Da        Isoelectric Point: 8.4335

>NTDB_id=996959 AAH687_RS11925 WP_008342406.1 2339108..2339878(+) (recO) [Bacillus altitudinis strain TN5S8]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICKQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=996959 AAH687_RS11925 WP_008342406.1 2339108..2339878(+) (recO) [Bacillus altitudinis strain TN5S8]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAAGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment