Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EL053_RS26915 Genome accession   NZ_LR134079
Coordinates   5412828..5413820 (-) Length   330 a.a.
NCBI ID   WP_126502665.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC9112     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5407828..5418820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL053_RS26905 (NCTC9112_05361) yieP 5410720..5411412 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  EL053_RS26910 (NCTC9112_05362) mdtD 5411435..5412862 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  EL053_RS26915 (NCTC9112_05363) cytR 5412828..5413820 (-) 993 WP_126502665.1 ribose operon transcriptional repressor RbsR Regulator
  EL053_RS26920 (NCTC9112_05364) rbsK 5413824..5414753 (-) 930 WP_114493741.1 ribokinase -
  EL053_RS26925 (NCTC9112_05365) rbsB 5414879..5415769 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  EL053_RS26930 (NCTC9112_05366) rbsC 5415794..5416759 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  EL053_RS26935 (NCTC9112_05367) rbsA 5416764..5418269 (-) 1506 WP_000387778.1 ribose ABC transporter ATP-binding protein RbsA -
  EL053_RS26940 (NCTC9112_05368) rbsD 5418277..5418696 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36654.93 Da        Isoelectric Point: 5.4086

>NTDB_id=996922 EL053_RS26915 WP_126502665.1 5412828..5413820(-) (cytR) [Escherichia coli strain NCTC9112]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSERVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=996922 EL053_RS26915 WP_126502665.1 5412828..5413820(-) (cytR) [Escherichia coli strain NCTC9112]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACTAATCCTTTCTATTCAGAACGGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATAA
TGCAACGTTATCCGACAGTACCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCTCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364