Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL053_RS17185 Genome accession   NZ_LR134079
Coordinates   3392375..3393004 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain NCTC9112     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3387375..3398004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL053_RS17170 (NCTC9112_03431) helD 3387617..3389671 (-) 2055 WP_021577221.1 DNA helicase IV -
  EL053_RS17175 (NCTC9112_03432) yccF 3389794..3390240 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EL053_RS17180 (NCTC9112_03433) yccS 3390250..3392412 (+) 2163 WP_000323868.1 YccS family putative transporter -
  EL053_RS17185 (NCTC9112_03434) sxy/tfoX 3392375..3393004 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EL053_RS17190 (NCTC9112_03435) sulA 3393223..3393732 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  EL053_RS17195 (NCTC9112_03436) ompA 3394089..3395144 (+) 1056 WP_000750414.1 porin OmpA -
  EL053_RS17200 (NCTC9112_03437) matP 3395220..3395672 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EL053_RS17205 (NCTC9112_03438) ycbZ 3395858..3397618 (+) 1761 WP_000156510.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=996889 EL053_RS17185 WP_000839153.1 3392375..3393004(-) (sxy/tfoX) [Escherichia coli strain NCTC9112]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=996889 EL053_RS17185 WP_000839153.1 3392375..3393004(-) (sxy/tfoX) [Escherichia coli strain NCTC9112]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1