Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSS89_RS06335 Genome accession   NZ_CP155471
Coordinates   1283389..1284336 (+) Length   315 a.a.
NCBI ID   WP_034768949.1    Uniprot ID   A0A090ITF9
Organism   Caldifermentibacillus hisashii strain FSL K6-2831     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1278389..1289336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS89_RS06320 (NSS89_06320) argS 1279001..1280707 (+) 1707 WP_346207127.1 arginine--tRNA ligase -
  NSS89_RS06325 (NSS89_06325) - 1280923..1281957 (-) 1035 Protein_1200 NADH:flavin oxidoreductase/NADH oxidase -
  NSS89_RS06330 (NSS89_06330) - 1282333..1283082 (+) 750 WP_051989024.1 EAL domain-containing protein -
  NSS89_RS06335 (NSS89_06335) ceuB 1283389..1284336 (+) 948 WP_034768949.1 ABC transporter permease Machinery gene
  NSS89_RS06340 (NSS89_06340) - 1284333..1285283 (+) 951 WP_034768950.1 iron chelate uptake ABC transporter family permease subunit -
  NSS89_RS06345 (NSS89_06345) - 1285277..1286035 (+) 759 WP_034768951.1 ABC transporter ATP-binding protein -
  NSS89_RS06350 (NSS89_06350) - 1286235..1287200 (+) 966 WP_251245533.1 siderophore ABC transporter substrate-binding protein -
  NSS89_RS06355 (NSS89_06355) - 1287469..1288530 (+) 1062 WP_251241173.1 C45 family peptidase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34552.73 Da        Isoelectric Point: 10.0987

>NTDB_id=996788 NSS89_RS06335 WP_034768949.1 1283389..1284336(+) (ceuB) [Caldifermentibacillus hisashii strain FSL K6-2831]
MKKRYLLLVLIILSLISLFIGVSDISVMDIFHLTDKQWQILVVSRIPRLISIIVSGASLSIAGLIMQSLSRNKFVSPTTA
GTMDFARLGILVAMIVFAGAGSLSKMFVAFVFALAGTFLFMKILERIKFKDAIFIPLVGLMLGNIVSSIATFFAYQNDLI
QNISSWLIGDFSIILKGNYELIFISVPLLFIAYLYANKFTIAGMGEDFSKGLGLNYRQVVNLGLIIVALITSSVVLTVGV
IPFLGLIIPNVVSIYRGDHLKNSLAPTAILGAIFVLFCDILGRVIIYPYEIPINLTVGVIGSAIFIYLLLRRQAQ

Nucleotide


Download         Length: 948 bp        

>NTDB_id=996788 NSS89_RS06335 WP_034768949.1 1283389..1284336(+) (ceuB) [Caldifermentibacillus hisashii strain FSL K6-2831]
ATGAAGAAGAGATACCTACTCCTAGTACTGATTATCCTTTCGCTTATATCCCTCTTTATCGGGGTATCAGATATTTCAGT
GATGGATATCTTTCATTTAACAGATAAACAATGGCAAATATTAGTAGTCAGTAGAATTCCAAGGCTAATCAGTATTATTG
TCTCGGGGGCATCGCTGAGTATTGCCGGGCTGATTATGCAAAGCTTAAGTCGAAATAAATTCGTCTCACCAACAACAGCG
GGTACGATGGATTTTGCCCGACTGGGAATTCTCGTTGCTATGATTGTTTTTGCCGGTGCCGGTTCACTTAGCAAAATGTT
TGTTGCTTTTGTATTCGCTTTAGCAGGGACCTTCCTGTTTATGAAAATCTTAGAAAGAATTAAATTTAAGGATGCGATAT
TTATCCCGCTTGTCGGGTTAATGCTAGGAAATATTGTCAGTTCAATTGCAACATTTTTTGCCTATCAAAATGATTTAATT
CAAAATATCTCATCATGGTTAATTGGTGATTTTTCCATCATTTTAAAAGGAAATTATGAATTAATTTTTATTAGTGTGCC
ACTCTTGTTTATTGCGTATCTTTATGCCAACAAATTTACAATTGCCGGAATGGGGGAGGATTTTTCAAAAGGTCTTGGTT
TAAACTACCGTCAAGTAGTTAATCTCGGTTTAATCATCGTTGCTCTTATTACATCATCGGTTGTCTTAACCGTTGGGGTA
ATCCCATTTTTGGGCCTTATTATTCCTAATGTTGTTTCGATTTATCGAGGCGATCATTTGAAGAATAGTTTAGCCCCAAC
AGCAATTCTTGGTGCCATTTTTGTTCTGTTTTGCGATATTCTCGGTCGAGTGATTATTTATCCGTATGAAATTCCAATCA
ATTTGACAGTAGGTGTTATTGGCAGTGCAATTTTTATTTACTTATTATTGAGGAGACAGGCACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090ITF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.341

98.73

0.537

Multiple sequence alignment