Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   MKZ19_RS15330 Genome accession   NZ_CP155470
Coordinates   3079911..3080864 (-) Length   317 a.a.
NCBI ID   WP_062749836.1    Uniprot ID   A0A268S1B2
Organism   Shouchella clausii strain FSL M8-0080     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3074911..3085864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ19_RS15300 (MKZ19_15300) - 3074977..3075600 (+) 624 WP_095305108.1 deoxynucleoside kinase -
  MKZ19_RS15305 (MKZ19_15305) - 3075612..3076241 (+) 630 WP_011247732.1 deoxynucleoside kinase -
  MKZ19_RS15310 (MKZ19_15310) - 3076278..3076886 (-) 609 WP_179290834.1 restriction endonuclease -
  MKZ19_RS15315 (MKZ19_15315) - 3077062..3078033 (-) 972 WP_346243398.1 siderophore ABC transporter substrate-binding protein -
  MKZ19_RS15320 (MKZ19_15320) - 3078150..3078971 (-) 822 WP_216924644.1 ATP-binding cassette domain-containing protein -
  MKZ19_RS15325 (MKZ19_15325) - 3078968..3079921 (-) 954 WP_157730442.1 iron chelate uptake ABC transporter family permease subunit -
  MKZ19_RS15330 (MKZ19_15330) ceuB 3079911..3080864 (-) 954 WP_062749836.1 ABC transporter permease Machinery gene
  MKZ19_RS15335 (MKZ19_15335) - 3081015..3081641 (-) 627 WP_346243399.1 phosphatase PAP2 family protein -
  MKZ19_RS15340 (MKZ19_15340) - 3081883..3083280 (+) 1398 WP_094426445.1 L-cystine transporter -
  MKZ19_RS15345 (MKZ19_15345) - 3083451..3083924 (-) 474 WP_063609019.1 small multi-drug export protein -
  MKZ19_RS15350 (MKZ19_15350) - 3084013..3084471 (+) 459 WP_063609018.1 DinB family protein -
  MKZ19_RS15355 (MKZ19_15355) - 3084500..3084880 (-) 381 WP_063609017.1 YisL family protein -
  MKZ19_RS15360 (MKZ19_15360) - 3084955..3085452 (-) 498 WP_035202680.1 cytochrome c biogenesis protein CcdC -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 35017.21 Da        Isoelectric Point: 10.1418

>NTDB_id=996769 MKZ19_RS15330 WP_062749836.1 3079911..3080864(-) (ceuB) [Shouchella clausii strain FSL M8-0080]
MKIRYLLPLLLILSFASLFIGVQDISPLDLFRLDDEDVQTLVISRIPRLLSVLIVGVSLSVCGLIMQQLTQNKFVSPTTA
GTMDWARLGILVAVVVFTQASTLQRMFIAFLFALFGTFLFMKILERIRFKNVVFVPLVGLMLGSVVNSITTFLAYRYDLV
QSLSSWMQGSFSLVLKGRYEILYIGIPLVVIAFLFANRFTVAGMGKDFSTNLGLNYNQIMNIGLFIVAMITATIVVTIGS
IPFLGLVIPNIVSIIRGDNLKNSLPHTALLGAIFLLACDILGRVLIYPYEIPIGLVVGVVGSAIFLYLLLRRRSHAA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=996769 MKZ19_RS15330 WP_062749836.1 3079911..3080864(-) (ceuB) [Shouchella clausii strain FSL M8-0080]
ATGAAAATAAGATATTTACTCCCTTTGCTTTTGATTTTATCGTTTGCATCTTTATTTATTGGCGTACAGGATATATCGCC
ACTTGATTTGTTTCGTCTAGACGATGAAGACGTGCAAACACTCGTCATTAGCCGTATCCCTCGTCTATTAAGTGTGTTGA
TTGTCGGTGTTAGTTTAAGCGTTTGCGGTTTAATTATGCAGCAGCTTACACAAAACAAATTTGTTTCGCCGACAACAGCT
GGAACTATGGATTGGGCTCGGCTTGGCATTCTTGTCGCCGTGGTTGTCTTTACACAAGCAAGCACGCTGCAAAGGATGTT
TATTGCCTTTCTTTTTGCGTTGTTTGGAACGTTTCTTTTTATGAAAATACTGGAGCGCATCCGCTTTAAAAACGTTGTGT
TTGTCCCGCTTGTCGGGCTTATGTTAGGTAGTGTGGTCAACTCAATCACCACTTTTCTAGCTTACCGATATGATTTAGTG
CAAAGCTTGTCTTCTTGGATGCAAGGGAGCTTTTCACTCGTTCTTAAAGGGCGCTATGAAATTTTATACATAGGCATTCC
CCTTGTTGTCATTGCCTTTTTATTCGCAAATCGCTTTACGGTGGCAGGAATGGGGAAGGATTTTTCGACAAACTTGGGCT
TAAATTATAACCAAATTATGAATATCGGCCTTTTCATTGTCGCGATGATCACGGCTACGATTGTCGTCACAATTGGTTCG
ATTCCTTTTTTAGGGCTAGTCATTCCAAACATCGTTTCGATTATAAGAGGGGACAACTTAAAAAACAGTTTGCCTCATAC
AGCGCTATTAGGCGCCATTTTCTTGCTCGCTTGTGATATTTTAGGGCGTGTTCTCATTTATCCATATGAAATTCCGATTG
GACTGGTCGTTGGGGTTGTCGGGAGCGCGATCTTTTTGTACTTGCTCTTAAGGAGACGATCTCATGCAGCCTAA

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A268S1B2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.367

99.685

0.492


Multiple sequence alignment