Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ELZ47_RS09470 Genome accession   NZ_LR134002
Coordinates   1893870..1894328 (-) Length   152 a.a.
NCBI ID   WP_125331247.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888870..1899328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS09460 (NCTC10904_01853) rcrQ 1890364..1892121 (-) 1758 WP_126435896.1 ABC transporter ATP-binding protein Regulator
  ELZ47_RS09465 (NCTC10904_01854) rcrP 1892111..1893877 (-) 1767 WP_125331246.1 ABC transporter ATP-binding protein Regulator
  ELZ47_RS09470 (NCTC10904_01855) rcrR 1893870..1894328 (-) 459 WP_125331247.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ELZ47_RS09475 (NCTC10904_01856) - 1894482..1894892 (-) 411 WP_125331248.1 peptide deformylase -
  ELZ47_RS09480 (NCTC10904_01857) scrK 1894939..1895838 (-) 900 WP_125331249.1 fructokinase ScrK -
  ELZ47_RS09485 (NCTC10904_01858) - 1895998..1898010 (-) 2013 WP_125331250.1 sucrose-specific PTS transporter subunit IIBC -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17575.42 Da        Isoelectric Point: 8.0195

>NTDB_id=996735 ELZ47_RS09470 WP_125331247.1 1893870..1894328(-) (rcrR) [Streptococcus sanguinis strain NCTC 10904]
MEKPLLEMKRFGRKIHLIVEKLAKEQGIESMAGPQGQVLHIVACRTEEGKDTLIKDIEQELDISKSVASNLMKRMEKNGF
IQLEISKTDKRAKYIRLTPQSQERMKKIRDFFDEMDRSILNGVSEQELLIFSQVMAKFYQNIESLENGGKDV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=996735 ELZ47_RS09470 WP_125331247.1 1893870..1894328(-) (rcrR) [Streptococcus sanguinis strain NCTC 10904]
ATGGAAAAGCCTTTATTAGAAATGAAGCGTTTTGGACGAAAGATTCATCTCATAGTGGAAAAGCTTGCCAAGGAGCAAGG
GATTGAGTCCATGGCTGGGCCGCAGGGGCAGGTCTTGCATATTGTCGCCTGTCGTACGGAAGAGGGGAAGGATACCCTTA
TTAAGGATATTGAGCAGGAGTTGGATATTTCCAAATCGGTGGCCTCTAACTTAATGAAAAGGATGGAGAAAAATGGCTTT
ATCCAGCTGGAAATCAGCAAGACAGACAAACGGGCCAAATATATCCGTCTCACTCCGCAGTCGCAGGAAAGAATGAAAAA
AATCCGTGACTTTTTTGATGAAATGGATCGTTCTATTTTGAATGGTGTTTCTGAGCAGGAACTACTGATTTTTTCTCAAG
TCATGGCCAAGTTTTATCAGAATATCGAAAGTTTAGAAAATGGAGGCAAAGATGTTTAA

Domains

Predicted by InterProScan.

Winged helix DNA-binding domain (HTH_27)

(33-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

40.411

96.053

0.388