Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ELZ47_RS04660 Genome accession   NZ_LR134002
Coordinates   906306..908525 (+) Length   739 a.a.
NCBI ID   WP_126435414.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 901306..913525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS04630 (NCTC10904_00912) - 901384..902007 (+) 624 WP_164549556.1 cystathionine beta-lyase -
  ELZ47_RS04635 (NCTC10904_00913) rnz 902018..902947 (+) 930 WP_002895167.1 ribonuclease Z -
  ELZ47_RS04640 (NCTC10904_00914) - 902944..903699 (+) 756 WP_125331335.1 SDR family NAD(P)-dependent oxidoreductase -
  ELZ47_RS04645 (NCTC10904_00915) - 903706..904416 (+) 711 WP_125331334.1 class I SAM-dependent methyltransferase -
  ELZ47_RS04650 (NCTC10904_00916) - 904475..905523 (+) 1049 Protein_861 acyltransferase family protein -
  ELZ47_RS04655 (NCTC10904_00917) - 905610..906200 (+) 591 WP_126435412.1 HD domain-containing protein -
  ELZ47_RS04660 (NCTC10904_00918) recJ 906306..908525 (+) 2220 WP_126435414.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ELZ47_RS04665 (NCTC10904_00919) - 908843..909355 (+) 513 WP_002897341.1 adenine phosphoribosyltransferase -
  ELZ47_RS04670 (NCTC10904_00920) metA 909503..910444 (+) 942 WP_125331330.1 homoserine O-acetyltransferase MetA -
  ELZ47_RS04675 (NCTC10904_00921) - 910453..911133 (+) 681 WP_125331329.1 DnaD domain-containing protein -
  ELZ47_RS04680 (NCTC10904_00922) yghU 911201..911989 (+) 789 WP_125331328.1 glutathione-dependent disulfide-bond oxidoreductase -
  ELZ47_RS04685 (NCTC10904_00923) - 912131..912820 (+) 690 WP_125331327.1 tRNA (adenine(22)-N(1))-methyltransferase -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82646.33 Da        Isoelectric Point: 4.4241

>NTDB_id=996695 ELZ47_RS04660 WP_126435414.1 906306..908525(+) (recJ) [Streptococcus sanguinis strain NCTC 10904]
MISSKYDWQFATNFIDEKFLKKAKKAGLEPAAASLLYQRGVQTEEALQEFLEPGLDQLHDPYDLHDMERAVERIRAAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQ
SLGVDVIVTDHHSMPEELPNAYAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQVELLDLVAIGTIADMVSLTGENR
ILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGRLDDPNPAVELLTGFDDEEARDIALMINQKN
DERKEIVQQIYEEAQTMLDSKRPVQVLAKEGWNPGVLGIVAGRLLEELHQPVIVLNIEDGIAKGSARSIEAINIFEALDS
HRDLFIAFGGHAGAAGMTLEADKLAELSVILTAYISDNDLDLTGKTALYLDEELHLPELTLDTLKSFERLAPFGMDNKKP
LFYLKGFKVDNARTMGAGNSHLKLKISQEDASFEVVAFGQGSLATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVD
GVQLFNIRSKNATLPDKVPVLRFTEELPDLTNSRAVVVYDLPDDLQVLKTILQSQDFEAIYFKNEIAKPYYLTGYGTREQ
FAKLYKTIYQFPEFDVRYKLKDLAAYLKIDPILLVKMIQIFEELGFVSITEGVMKVNKEAEKKEIDSSRVYQDLKRLVKE
QELMALGTVQEIYDYLMER

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=996695 ELZ47_RS04660 WP_126435414.1 906306..908525(+) (recJ) [Streptococcus sanguinis strain NCTC 10904]
ATGATTAGCTCAAAATACGACTGGCAGTTTGCCACTAATTTTATAGACGAAAAATTTTTAAAAAAGGCTAAGAAAGCTGG
ATTAGAACCTGCCGCTGCCAGTCTTCTTTACCAAAGAGGTGTGCAGACTGAAGAGGCTTTACAGGAATTTTTGGAGCCTG
GTTTAGACCAGCTTCACGACCCTTATGACCTGCATGATATGGAGCGGGCAGTGGAGCGCATTCGCGCAGCGATTGAGAAC
TACGAGCAGATTTTGATCTATGGCGATTATGATGCTGATGGGATGACCTCAGCATCTATTGTCAAGGAAGCCTTGGAGCA
GCTGGGGGCGGAGTGTCAGGTCTATCTGCCCAATCGCTTTACGGACGGCTATGGTCCTAATAGCAGTGTTTACAAATATT
TTATTGAAAATCAAGGCATCTCGCTCATTATTACAGTGGATAATGGAGTGGCTGGCCTTGAAGCTATCGAGCTGGCCCAG
TCTCTCGGCGTGGATGTCATCGTGACGGATCACCACTCCATGCCTGAGGAGCTGCCAAATGCCTATGCGATTGTCCATCC
GGAACATAGCGGAGCGGATTACCCTTTCAAGCATCTGGCTGGCTGTGGAGTGGCTTTTAAGCTGGCAACAGCCTTGCTGG
AAGAAGTCCAAGTCGAACTTTTGGACTTAGTTGCTATCGGTACCATTGCCGATATGGTCAGTCTGACGGGGGAAAATCGG
ATTCTAGTCAAATATGGTCTCTCTGTTCTCAAAAATACCCAGCGCGTAGGACTTCAGGAACTCTTCAAAATCGCTGGTAT
TCAGCCAGATGAACTGGATGAAGAAACGGTTGGCTTCCAGCTTGCTCCCCGACTCAATGCTTTGGGACGGCTGGACGATC
CCAATCCAGCGGTTGAACTTTTGACTGGCTTTGATGACGAAGAAGCTCGTGACATTGCGCTTATGATTAACCAGAAAAAT
GACGAGCGCAAGGAAATCGTCCAGCAGATTTATGAAGAGGCACAAACCATGCTGGATTCTAAGAGACCAGTGCAGGTGTT
GGCCAAGGAAGGCTGGAATCCTGGTGTACTAGGAATTGTCGCAGGGCGCTTGCTGGAAGAGCTGCACCAGCCAGTCATAG
TGCTCAATATTGAGGATGGTATCGCAAAGGGCAGCGCCCGCAGTATTGAAGCGATCAATATTTTTGAGGCCTTGGACAGC
CACCGTGACCTCTTTATAGCCTTTGGTGGGCACGCTGGAGCAGCTGGAATGACTCTTGAAGCAGACAAACTAGCAGAGCT
ATCTGTTATCCTGACAGCCTACATCTCAGATAATGATTTGGATTTGACTGGCAAAACAGCCCTGTATTTAGATGAGGAGC
TGCACCTGCCAGAACTGACCCTTGACACACTTAAAAGCTTTGAGAGACTGGCGCCTTTTGGTATGGACAATAAGAAGCCG
CTTTTTTACCTCAAGGGCTTTAAAGTGGATAATGCTCGGACTATGGGGGCTGGCAATAGCCATCTCAAGCTGAAAATTTC
TCAGGAAGATGCATCTTTTGAAGTAGTAGCTTTTGGTCAAGGAAGCCTAGCGACAGAGTTTGCCCAAACCAAGAATCTGG
AGTTAGCTGTCAGCCTCTCTGTCAATAAATGGAATGGACAGACCAGTCTCCAGCTCATGCTGGTAGATGCCCGTGTGGAC
GGTGTTCAGCTTTTCAATATTCGCAGCAAAAATGCGACGCTGCCTGACAAGGTTCCAGTCTTGCGTTTCACAGAGGAGTT
GCCAGATTTGACAAATAGCAGAGCAGTTGTGGTTTATGACCTGCCCGATGATTTGCAGGTCTTGAAGACGATTCTTCAGT
CTCAGGATTTTGAAGCGATTTACTTTAAGAATGAGATTGCTAAGCCATACTATCTGACCGGTTACGGTACCCGTGAGCAG
TTTGCCAAACTTTACAAGACAATTTATCAGTTCCCTGAGTTTGACGTTCGCTATAAGCTTAAGGATCTAGCAGCTTACCT
GAAAATCGACCCTATTCTCTTGGTCAAAATGATTCAGATTTTTGAAGAGTTGGGCTTTGTCAGCATCACGGAAGGCGTCA
TGAAAGTCAATAAAGAAGCAGAAAAGAAAGAAATTGACAGCAGTCGTGTTTATCAAGATCTCAAGCGCCTAGTCAAAGAA
CAAGAACTCATGGCTCTGGGCACCGTGCAGGAGATTTATGATTATTTGATGGAGAGATGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(592-733)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-428)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

75.372

100

0.754
  recJ Bacillus subtilis subsp. subtilis str. 168

38.083

100

0.398