Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   ELZ47_RS04525 Genome accession   NZ_LR134002
Coordinates   880360..883641 (+) Length   1093 a.a.
NCBI ID   WP_125331353.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 875360..888641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS04495 (NCTC10904_00883) - 875822..877579 (+) 1758 WP_164549554.1 glycoside hydrolase family 13 protein -
  ELZ47_RS04500 (NCTC10904_00884) - 877704..877940 (+) 237 WP_126435398.1 AbrB family transcriptional regulator -
  ELZ47_RS04505 (NCTC10904_00885) - 877937..878347 (+) 411 WP_125434353.1 type II toxin-antitoxin system death-on-curing family toxin -
  ELZ47_RS04510 (NCTC10904_00886) - 878377..878919 (+) 543 WP_126435400.1 ClbS/DfsB family four-helix bundle protein -
  ELZ47_RS04515 (NCTC10904_00887) - 878954..879799 (+) 846 WP_126435402.1 DUF4300 family protein -
  ELZ47_RS04520 (NCTC10904_00888) - 879847..880158 (+) 312 WP_125331354.1 hypothetical protein -
  ELZ47_RS04525 (NCTC10904_00889) rexB 880360..883641 (+) 3282 WP_125331353.1 ATP-dependent nuclease subunit B Machinery gene
  ELZ47_RS04530 (NCTC10904_00890) rexA 883638..887312 (+) 3675 WP_126435404.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ELZ47_RS04535 (NCTC10904_00891) - 887346..887651 (+) 306 WP_002900075.1 DUF4298 domain-containing protein -

Sequence

Protein


Download         Length: 1093 a.a.        Molecular weight: 124452.03 Da        Isoelectric Point: 5.0361

>NTDB_id=996693 ELZ47_RS04525 WP_125331353.1 880360..883641(+) (rexB) [Streptococcus sanguinis strain NCTC 10904]
MKLLYTDIRHSLTKVLVAEAESLVAAGKRVFYIAPNSLSFEKERAVLECLKTQASFAITVTRFAQMARYFVLNDVRQGQS
LDDIGLGMLIYRTLTELDDGELKVYGRIKKDPQFIQQLMDLYHELQTAQMSFADLEFLEEPEKREDLVKIFTAVTAALNK
GDFDSSSQIAAFAQHILSGDTDEELENLALVIDGFTRFSAEEEYLVGLLHRKGVEIVIGTYASQKSYRAAFREGNLYQAS
VDFLRKLAEDYQVKPDYIPHAEAEDAFGRISKVLESRYDFSESTVSLSETDRSQLQIWSTMNQKEELEFVAKSIRQRVHD
GVRYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQLEDLVNLLKTGLYGDLTQE
ELDHFEQYLRYADIKGAGKLAKDFTANSQGKFDLDRLNHIRRRVMTPMQDFFKSRSQTVSGLLAKFTEFVQAARFSDNLT
ALLQGASQQEQERHEEVWKAFSHVLEQFAQVFEDSKVKLDDFLALILSGMLLSNYRTVPATVDVVKVQSYDLIEPLAAPY
VYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKHRYTALSLMNSATKELVLSAPALVNEVEDSI
STYLLELTAAPLSLPIIVKKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPHIS
KELKTEPLQSETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRIFEKVLQDDSSAD
FDRRLAQAMEETSREAEFESIYSESGQTRFARQLLLDTARATGRVLAHPSGIETIGEETGFGSASKPFLTLENGRAVTVS
GKVDRIDRLTKTESLGVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEEKGTFGAMYLQMTDPIVALKDTKTL
ADAANQSMKPLQYKGLFVADAVKDLGPLYEKNKTNLLSQEDLDLLLAYNAYLYKKAAEGILSGRFAVNPYTENGRSIAPY
VEQFKAITGFEANFHLGQARQLEKLDTSKFDRRPTGEKLRQAWLEKMREEMEK

Nucleotide


Download         Length: 3282 bp        

>NTDB_id=996693 ELZ47_RS04525 WP_125331353.1 880360..883641(+) (rexB) [Streptococcus sanguinis strain NCTC 10904]
ATGAAATTACTTTATACAGATATTCGCCATTCTTTGACCAAGGTTTTGGTGGCTGAGGCTGAGAGCTTGGTGGCGGCTGG
TAAGCGAGTCTTTTATATTGCGCCAAATTCGCTATCTTTTGAGAAGGAGCGGGCGGTTTTGGAGTGCCTGAAAACTCAGG
CTTCCTTTGCCATTACGGTGACGCGCTTTGCCCAGATGGCTCGGTATTTTGTCCTCAATGATGTTCGGCAAGGGCAGAGT
TTGGACGATATTGGTCTGGGAATGTTGATTTATCGGACCTTGACAGAGTTAGATGATGGCGAACTTAAGGTCTATGGCAG
AATTAAGAAGGATCCCCAGTTTATCCAGCAACTGATGGATCTTTACCATGAACTGCAGACCGCCCAGATGTCCTTTGCGG
ATTTGGAATTTCTTGAGGAGCCTGAGAAGCGGGAGGATCTGGTCAAGATTTTTACAGCGGTGACTGCTGCTCTGAATAAG
GGCGATTTTGATTCGTCTTCTCAGATTGCCGCTTTTGCCCAGCATATTCTATCAGGTGATACGGATGAGGAGTTGGAGAA
TCTAGCTCTGGTCATTGATGGCTTTACTCGATTTTCTGCCGAAGAGGAATACCTAGTTGGTCTTCTTCATCGGAAAGGTG
TTGAGATTGTTATCGGTACCTATGCCAGCCAAAAATCCTATCGAGCAGCCTTTCGTGAGGGCAATCTCTATCAGGCTAGT
GTGGATTTTTTGAGAAAGCTGGCTGAGGACTATCAGGTCAAGCCTGACTATATCCCTCATGCAGAAGCAGAAGATGCCTT
TGGTCGGATTTCCAAGGTCTTGGAGAGTCGCTATGACTTTTCAGAATCAACGGTTAGTCTTAGTGAGACAGACCGCTCAC
AGCTTCAAATTTGGTCTACTATGAACCAGAAAGAAGAGCTGGAGTTTGTGGCTAAGTCCATCCGACAGCGGGTTCATGAT
GGTGTGCGCTATAAGGATATTCGTCTGCTTTTGGGAGATGTGGAAGCCTACCAGCTTCAGCTCAAGACCATTTTTGACCA
GTATCAGATTCCCTACTATCTGGGGCGGAGTGAGTCGATGGCCCAGCATCCGCTGGTTCAGTTTGTTGAGTCCTTGGAGC
GGCTCAAGCGCTATAACTTCCAACTGGAAGACCTGGTCAATCTCTTAAAGACGGGCCTCTACGGAGATTTGACTCAAGAG
GAGCTGGATCATTTTGAGCAATATCTGCGCTATGCTGACATTAAGGGTGCAGGCAAGCTAGCTAAGGATTTCACGGCCAA
TAGCCAAGGGAAATTTGACCTAGACCGTCTTAATCATATTCGCCGCCGGGTCATGACTCCGATGCAAGACTTTTTCAAAT
CCCGCAGCCAGACGGTGTCGGGGCTCTTAGCTAAGTTTACGGAGTTCGTCCAAGCAGCCCGTTTTTCGGACAATTTGACG
GCTCTGCTGCAGGGAGCAAGTCAGCAGGAGCAGGAGCGTCATGAGGAAGTCTGGAAGGCTTTTAGTCATGTTCTAGAGCA
GTTTGCTCAGGTCTTTGAAGATAGCAAGGTAAAACTGGACGACTTTCTGGCCTTGATCCTGTCTGGCATGCTTTTGTCCA
ACTATCGGACGGTGCCAGCAACAGTAGATGTGGTCAAGGTCCAGTCTTATGACCTGATAGAGCCTTTAGCAGCTCCTTAC
GTCTATGCGATTGGACTGACCCAGGAGCGTTTCCCGAAAATCGCGCAAAACAAGAGTTTGCTCAGTGATGAAGACCGGGC
TCGGCTCAATGACGCAACGGATTCTCAGGCCGAACTCCAGATTGCCAGTTCAGAAAATCTCAAGAAGCATCGCTATACAG
CTCTATCACTGATGAATTCTGCCACCAAAGAGCTGGTCTTGTCTGCACCAGCCTTGGTCAATGAAGTAGAGGACAGCATA
TCGACCTATCTACTGGAATTGACTGCAGCTCCGCTTTCCTTGCCCATCATTGTCAAAAAGCCTCAGGCTTCCAGTGATGA
TATTGGTAGCTACCGAGCTCTACTTTCTCAAATTATTGAGCTCCACCAAGAGGAGATTGACCGAGAGTGGACAGCAGAGG
AGCAGACTTTTTGGGCAGTAGCTGTGCGGGTACTGCGCAAGAAATTGGCAGCAGAAGGCATCAGCATTCCGCACATCAGC
AAGGAACTGAAAACGGAGCCTCTGCAGTCGGAAACTTTGCAAGCCCTCTACCCTCAAGAACAGCCTCTGAGACTGTCAGC
GTCTGCCCTCAACGAATATTTCCGGCATCAGTATGCTTATTTTCTCAAGTATGTTCTGCGTCTGCAGGAAGAGTGGACCA
TTCATCCTGATGCTCGCAGTCATGGGATTTTCCTTCACCGGATTTTCGAAAAGGTTCTGCAGGATGATTCGTCTGCCGAT
TTTGACCGGCGTTTAGCGCAGGCTATGGAAGAGACTAGCCGAGAGGCTGAGTTTGAGAGCATCTACAGTGAGTCAGGCCA
GACCCGTTTTGCCCGCCAGCTCTTACTAGATACGGCGCGGGCGACTGGCCGTGTGCTGGCTCATCCAAGCGGGATTGAGA
CCATTGGTGAGGAGACTGGCTTTGGATCTGCTTCTAAGCCTTTCCTGACCTTGGAAAATGGCAGAGCAGTGACCGTGAGC
GGAAAGGTGGACCGGATTGACCGTCTGACTAAGACCGAGAGTTTGGGAGTGGTGGACTATAAGTCTGGCGATATTAAGTT
CAGCTTTGAAAAGTTCTTTAATGGACTGAATTCTCAGCTGCCGACCTATCTGGCAGCGATTGAGGAGTTAGCAGACTATC
AAGAGGAAAAGGGCACTTTTGGCGCCATGTATTTGCAGATGACCGATCCGATTGTGGCGCTTAAAGATACCAAGACCTTG
GCGGATGCAGCCAATCAGTCTATGAAGCCACTCCAGTACAAGGGACTTTTTGTGGCTGATGCTGTCAAGGATCTTGGTCC
GCTCTATGAAAAAAATAAGACAAACTTGCTGAGTCAGGAAGACTTGGACTTGCTGCTGGCCTACAATGCTTATCTTTACA
AAAAAGCCGCGGAAGGCATACTATCAGGTCGCTTTGCAGTCAATCCTTATACAGAGAATGGGCGAAGCATTGCTCCTTAT
GTAGAGCAGTTTAAGGCCATTACAGGCTTTGAAGCCAATTTCCATCTTGGACAGGCACGCCAGCTGGAAAAGCTGGATAC
AAGCAAGTTTGATAGGCGGCCGACTGGTGAGAAGTTGCGCCAGGCCTGGCTAGAAAAGATGAGGGAGGAGATGGAAAAAT
GA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1031)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

57.156

100

0.574

Multiple sequence alignment