Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NSQ14_RS06165 Genome accession   NZ_CP155467
Coordinates   1313207..1315024 (+) Length   605 a.a.
NCBI ID   WP_346216988.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0862     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1308207..1320024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ14_RS06140 (NSQ14_06140) sspO 1308401..1308562 (+) 162 WP_034769119.1 small acid-soluble spore protein O -
  NSQ14_RS06145 (NSQ14_06145) trpS 1308617..1309603 (-) 987 WP_346216986.1 tryptophan--tRNA ligase -
  NSQ14_RS06150 (NSQ14_06150) spxA 1310332..1310727 (+) 396 WP_034769143.1 transcriptional regulator SpxA -
  NSQ14_RS06155 (NSQ14_06155) mecA 1311076..1311741 (+) 666 WP_041846033.1 adaptor protein MecA -
  NSQ14_RS06160 (NSQ14_06160) - 1311909..1313105 (+) 1197 WP_346216987.1 competence protein CoiA family protein -
  NSQ14_RS06165 (NSQ14_06165) pepF 1313207..1315024 (+) 1818 WP_346216988.1 oligoendopeptidase F Regulator
  NSQ14_RS06170 (NSQ14_06170) - 1316121..1317143 (-) 1023 WP_346216989.1 ClpXP adapter SpxH family protein -
  NSQ14_RS06175 (NSQ14_06175) - 1317140..1317550 (-) 411 WP_034769151.1 globin -
  NSQ14_RS06180 (NSQ14_06180) - 1317801..1318412 (-) 612 WP_041846036.1 lytic transglycosylase domain-containing protein -
  NSQ14_RS06185 (NSQ14_06185) - 1318435..1319019 (-) 585 WP_346216990.1 CYTH domain-containing protein -
  NSQ14_RS06190 (NSQ14_06190) - 1319375..1320001 (+) 627 WP_095142212.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70021.95 Da        Isoelectric Point: 4.9096

>NTDB_id=996621 NSQ14_RS06165 WP_346216988.1 1313207..1315024(+) (pepF) [Caldifermentibacillus hisashii strain FSL W8-0862]
MSTEKAVKKLPARNEIPVKDTWALENIFATDEKWKEEFERIKAIIPKAFEFQGKLGENADVLYEALQYQDEVMMRLGKLY
TYAHMRYDQDTTNSFYQGMNDQARNLYTQAASAFSFVVPELLAIDENKIRQFLTEKEELKLYEHALEEINLQRPHVLSPE
VEAILAQSTEVTDASSNTFGMLNNADLEFPSIVDENGEEVEITHGRYIRFLESADRRVRKDAFHALYETYGKFRNTFAST
LSGQVKRNNFYANVRKYKSAREAALSANNIPESVYDNLVETINKNLPLLHRYVALRKKVLGLDELHMYDLYTPLVKDVKM
EVTFEEAKDIVLKGLAPMGEEYLSVLKEGFANRWVDVHENKGKRSGAYSSGAYGTDPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPFPYGDYSIFVAEVASTCNENLLSEYLLKTLDDDRKRLYILNNYLETFRGTVFRQTMFAEFEHDIHIRSQ
KGEALTAELLTNIYYDLNKKYFGDDVVIDEEIGLEWARIPHFYYNYYVYQYATGLSASTALSKQILEEGEPAVERYIGYL
KSGSSDYPIEVLKKAGVDMTTAEPIENACKVFEEKLTEMERLLNR

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=996621 NSQ14_RS06165 WP_346216988.1 1313207..1315024(+) (pepF) [Caldifermentibacillus hisashii strain FSL W8-0862]
ATGTCAACAGAAAAAGCAGTAAAAAAGCTGCCGGCAAGAAATGAAATCCCGGTAAAGGATACATGGGCACTGGAAAATAT
TTTTGCAACAGACGAAAAATGGAAAGAGGAGTTTGAGCGGATTAAAGCGATAATTCCTAAAGCTTTTGAATTTCAAGGGA
AACTTGGTGAAAATGCTGACGTTTTATATGAAGCATTGCAATATCAAGATGAAGTGATGATGCGACTGGGGAAATTGTAT
ACATATGCCCATATGCGATATGATCAGGATACGACAAATTCTTTCTATCAAGGAATGAATGATCAAGCGAGAAATTTGTA
TACTCAGGCAGCAAGTGCTTTTTCCTTCGTTGTCCCCGAATTACTGGCGATTGATGAGAATAAAATTCGACAGTTTTTAA
CCGAAAAAGAAGAATTAAAGTTATATGAGCATGCTTTGGAAGAAATTAATTTGCAACGTCCGCATGTATTGTCACCTGAA
GTAGAAGCGATTTTAGCCCAAAGTACAGAAGTGACGGATGCGTCGAGTAATACATTCGGCATGCTAAATAACGCAGACTT
GGAGTTTCCATCTATTGTGGATGAAAACGGAGAAGAAGTCGAAATAACGCACGGCCGTTATATTCGCTTTTTAGAAAGTG
CGGATCGCCGTGTGCGAAAAGATGCGTTTCATGCTTTATATGAAACGTATGGGAAATTTCGAAATACGTTTGCGAGTACA
CTAAGCGGACAAGTAAAACGCAATAATTTTTATGCTAATGTCCGTAAATACAAATCGGCACGGGAAGCCGCACTATCCGC
CAACAATATTCCGGAGTCGGTATATGATAATTTAGTGGAAACAATCAATAAAAACTTGCCGCTTCTACACCGTTATGTCG
CATTACGGAAAAAGGTGCTTGGACTTGATGAATTGCATATGTATGATTTGTATACACCGCTTGTTAAAGATGTCAAAATG
GAAGTGACCTTTGAAGAGGCAAAAGATATCGTCTTAAAAGGATTGGCTCCAATGGGGGAAGAATATCTTTCCGTTTTAAA
AGAAGGGTTTGCCAATCGCTGGGTAGATGTCCATGAAAATAAAGGAAAAAGAAGCGGGGCTTACTCATCCGGAGCGTATG
GAACCGATCCGTATATATTGTTAAACTGGCAAGACAATGTCAATAATTTGTTTACCCTTGCCCATGAATTTGGTCATTCG
GTACATAGTTACTATACAAGGAAATACCAACCATTTCCTTATGGCGATTATTCGATTTTTGTTGCCGAAGTTGCCTCCAC
TTGTAATGAAAATTTATTAAGTGAGTATTTGTTAAAAACATTGGACGATGATAGAAAACGGCTGTACATTTTGAATAATT
ATTTGGAAACATTCCGTGGCACGGTATTCCGGCAGACCATGTTTGCTGAATTTGAACATGATATTCACATTCGTTCCCAA
AAAGGGGAAGCATTGACGGCAGAATTACTGACAAACATTTATTATGATTTAAATAAAAAATATTTTGGTGATGATGTTGT
TATTGACGAGGAAATTGGCTTAGAATGGGCGAGAATTCCACATTTCTACTACAACTATTATGTTTACCAATATGCAACGG
GCTTAAGTGCATCAACGGCATTGAGTAAACAAATTTTAGAAGAAGGAGAGCCTGCCGTAGAACGATATATCGGTTATTTG
AAATCCGGAAGCTCGGATTATCCAATCGAAGTGTTGAAAAAAGCCGGGGTGGATATGACAACGGCGGAACCGATCGAAAA
TGCCTGCAAAGTTTTTGAAGAGAAATTGACTGAAATGGAACGACTATTAAATAGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.096

98.017

0.501

Multiple sequence alignment