Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QMM73_RS10380 Genome accession   NZ_AP027135
Coordinates   2080106..2080822 (+) Length   238 a.a.
NCBI ID   WP_054189591.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP089     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2075106..2085822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM73_RS10350 (JP089_19280) - 2075324..2075950 (+) 627 WP_000522384.1 nitroreductase family protein -
  QMM73_RS10355 (JP089_19290) - 2076311..2077096 (+) 786 WP_061838913.1 carbon-nitrogen family hydrolase -
  QMM73_RS10360 (JP089_19300) - 2077693..2077827 (-) 135 WP_001549197.1 delta-lysin family phenol-soluble modulin -
  QMM73_RS10365 (JP089_19310) - 2078063..2078626 (+) 564 WP_001105705.1 accessory gene regulator AgrB -
  QMM73_RS10370 (JP089_19320) - 2078630..2078770 (+) 141 WP_000735197.1 cyclic lactone autoinducer peptide -
  QMM73_RS10375 (JP089_19330) - 2078795..2080087 (+) 1293 WP_000387809.1 GHKL domain-containing protein -
  QMM73_RS10380 (JP089_19340) agrA 2080106..2080822 (+) 717 WP_054189591.1 LytTR family DNA-binding domain-containing protein Regulator
  QMM73_RS10385 - 2080894..2081003 (+) 110 Protein_2008 hypothetical protein -
  QMM73_RS10390 (JP089_19350) - 2081191..2082150 (-) 960 WP_001253302.1 carbohydrate kinase -
  QMM73_RS10395 (JP089_19360) - 2082147..2083631 (-) 1485 WP_000141420.1 sucrose-6-phosphate hydrolase -
  QMM73_RS10400 (JP089_19370) - 2083780..2084730 (-) 951 WP_000790324.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27904.92 Da        Isoelectric Point: 6.3001

>NTDB_id=99662 QMM73_RS10380 WP_054189591.1 2080106..2080822(+) (agrA) [Staphylococcus aureus strain JP089]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDNRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=99662 QMM73_RS10380 WP_054189591.1 2080106..2080822(+) (agrA) [Staphylococcus aureus strain JP089]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGCGAACTTACCTATTTAACGTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATAATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment