Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ14_RS05610 Genome accession   NZ_CP155467
Coordinates   1198686..1199633 (+) Length   315 a.a.
NCBI ID   WP_227091289.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0862     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1193686..1204633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ14_RS05590 (NSQ14_05590) - 1194307..1194414 (-) 108 WP_082025893.1 YjcZ family sporulation protein -
  NSQ14_RS05595 (NSQ14_05595) - 1194718..1195497 (-) 780 WP_041848206.1 MerR family transcriptional regulator -
  NSQ14_RS05600 (NSQ14_05600) - 1196220..1197254 (-) 1035 WP_041845982.1 NADH:flavin oxidoreductase/NADH oxidase -
  NSQ14_RS05605 (NSQ14_05605) - 1197630..1198379 (+) 750 WP_251245532.1 EAL domain-containing protein -
  NSQ14_RS05610 (NSQ14_05610) ceuB 1198686..1199633 (+) 948 WP_227091289.1 ABC transporter permease Machinery gene
  NSQ14_RS05615 (NSQ14_05615) - 1199630..1200580 (+) 951 WP_346216969.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ14_RS05620 (NSQ14_05620) - 1200574..1201332 (+) 759 WP_034768951.1 ABC transporter ATP-binding protein -
  NSQ14_RS05625 (NSQ14_05625) - 1201532..1202497 (+) 966 WP_251245533.1 siderophore ABC transporter substrate-binding protein -
  NSQ14_RS05630 (NSQ14_05630) - 1202766..1203827 (+) 1062 WP_034768953.1 C45 family peptidase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34566.75 Da        Isoelectric Point: 10.0987

>NTDB_id=996616 NSQ14_RS05610 WP_227091289.1 1198686..1199633(+) (ceuB) [Caldifermentibacillus hisashii strain FSL W8-0862]
MKKRYLLLVLIILSLISLFIGVSDISVMDIFHLTDKQWQILVVSRIPRLISIIVSGASLSIAGLIMQSLSRNKFVSPTTA
GTMDFARLGILIAMIVFAGAGSLSKMFVAFVFALAGTFLFMKILERIKFKDAIFIPLVGLMLGNIVSSIATFFAYQNDLI
QNISSWLIGDFSIILKGNYELIFISVPLLFIAYLYANKFTIAGMGEDFSKGLGLNYRQVVNLGLIIVALITSSVVLTVGV
IPFLGLIIPNVVSIYRGDHLKNSLAPTAILGAIFVLFCDILGRVIIYPYEIPINLTVGVIGSAIFIYLLLRRQAQ

Nucleotide


Download         Length: 948 bp        

>NTDB_id=996616 NSQ14_RS05610 WP_227091289.1 1198686..1199633(+) (ceuB) [Caldifermentibacillus hisashii strain FSL W8-0862]
ATGAAGAAGAGATACCTACTCCTAGTACTGATTATCCTTTCGCTTATATCCCTCTTTATCGGGGTATCAGATATTTCAGT
GATGGATATCTTTCATTTAACAGATAAACAATGGCAAATATTAGTAGTCAGTAGAATTCCAAGGCTAATTAGTATTATTG
TCTCGGGGGCATCACTGAGTATTGCCGGGCTGATTATGCAAAGCTTAAGCCGCAATAAATTCGTCTCACCAACAACAGCG
GGTACGATGGATTTTGCCCGACTGGGAATTCTCATCGCTATGATTGTTTTTGCCGGTGCCGGTTCACTTAGCAAAATGTT
TGTTGCTTTTGTATTCGCTTTAGCAGGGACCTTCCTGTTTATGAAAATCTTAGAAAGAATTAAATTTAAGGATGCGATAT
TTATCCCGCTTGTCGGGTTAATGCTAGGAAATATTGTCAGTTCAATTGCAACATTTTTTGCCTATCAAAATGATTTAATT
CAAAATATCTCATCATGGTTAATTGGTGATTTTTCCATCATTTTAAAAGGAAATTATGAATTAATTTTTATTAGTGTGCC
ACTCTTGTTTATTGCGTATCTTTATGCCAACAAATTTACAATTGCCGGAATGGGGGAGGATTTTTCAAAAGGTCTTGGTT
TAAACTACCGTCAAGTAGTTAATCTCGGTTTAATCATCGTTGCTCTTATTACATCATCGGTTGTCTTAACCGTTGGGGTA
ATCCCATTTTTGGGCCTTATTATTCCTAATGTTGTTTCGATTTATCGAGGCGATCATTTGAAGAATAGTTTAGCCCCAAC
AGCAATTCTTGGTGCCATTTTTGTTCTGTTTTGCGATATTCTCGGTCGAGTGATTATTTATCCGTATGAAATTCCAATCA
ATTTGACAGTAGGTGTTATTGGCAGTGCAATTTTTATTTACTTATTATTGAGGAGACAGGCACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.662

98.73

0.54

Multiple sequence alignment